Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48870 360 / 5e-117 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 340 / 3e-108 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G53500 330 / 9e-105 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 306 / 2e-95 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G42010 302 / 1e-93 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 300 / 8e-92 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 298 / 2e-90 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 273 / 3e-81 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 269 / 1e-79 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 93 / 1e-20 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033525 [exp] 841 / 0 AT1G48870 400 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1) Lus10017312 [exp] 321 / 4e-101 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 314 / 1e-98 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032436 [exp] 299 / 6e-92 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 291 / 4e-89 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024399 [exp] 283 / 1e-84 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003974 [exp] 283 / 4e-84 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022377 [exp] 244 / 5e-72 AT5G24320 530 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039934 [exp] 231 / 6e-67 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G057600 [exp] 473 / 6e-160 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 469 / 1e-158 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G009700 [exp] 349 / 2e-111 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G144400 [exp] 336 / 5e-106 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 331 / 2e-104 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 325 / 4e-102 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G086600 [exp] 323 / 4e-101 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G122500 [exp] 313 / 7e-96 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 292 / 8e-88 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G084600 [exp] 283 / 2e-84 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10020846 pacid=23177985 polypeptide=Lus10020846 locus=Lus10020846.g ID=Lus10020846.BGIv1.0 annot-version=v1.0 ATGTATGAGATTTGGGTGAATGAGCCTCAGAGTGTTGAGGAGAGACGCCGGAAGTTCTTGTCCCAAATGGGTATTTCTGAGGAGGTTGATGATCATCATG GCCATTGTTTGTTGCAGAGGATGTCTGATCACTGCAGTGAGGAGGCTGAAATGTCAAGCGGTGGATTTGAGGAAAGTGAAAGTCTTTGTTCAGGGAGAGA TCAGAGTGTTTCTGAAGCTAATTCCATGGCTAATGATGACGATGATGATGACGATACAGAAGAAGTAGAAGAAGAAGAGGAGTTTGAATGTCGAAAATCG GGGGATGAGGCTTCGACATCGGTGGAGAAGGCCAAGATGAAGAGTTGGTGGAGCTGGAAGAAGTTTGTGAGTAGTAGTAGTGAAGTGTCTTCTCCTTCTT CAAAGGTTAAAACTTTAGCAAAAGTGAAGTGTAACAAGAAGAGGTATATGGAGCTTACAGGGTTGCTTGTAGGGCAAGAAATCCAAGGTCACAAGGGTAT CATTTGGACTATGAAATTCAGCCCTGATGGGAAGTATTTAGCTACCGGTGGTGAAGATGGAATTGTTAGAGTTTGGAGGGTTCAAACAGCAATTTCAGAA GATCCTTCTGCTATGTCCTTCTTCGCTGATCCGAAGAAGGGCGGTAGTCGTCCTCCCATTGTTGTTCCGGAGAGGGTTTTCTCGATCGAGGGGTCGCCTG TCCACGAATTCCGTGGCCATTCCAGTGATGTTCTTGATTTGGCTTGGTCAAGTTCAAACGTGCTTCTGTCTTCTTCAAAGGATAAAACTGTTCGGTTGTG GCGAGTTGGCTGCAATGACTGCATTAATGTGTTTCGCCATGGAAACTATGTGACATGCATCCAGTTCAATCCTGTGAATGAGAACTCCTTCATCAGTGGA TCAATCGATGGAAAAGTTCGAATCTGGGGAGTTAACGAGGCACGAGTCATCGATTGGACAGATGTTCGTGACGTCATATCTGCGATATGTTACAGGCCAG ATGGCAAGGAGTTTGTCGTTGGTACGTTTCGAGGGACATGCCGTTTCTATGATGTATCAGGCCAAGATATGCAACTGGAAGTAGAGATTCATATTCAAGG TAGAAAGAGAACATCATGCAACAGAATCACAGGCATTCAGTTTTCTCAGGAAAAAGCTCCAAAAGTTATGATCACTTCTGAAGACTCCAAAGTCAGAATC TTTGATGGGTTTGATCTTGTCCACAAATTTAAAGGACTAACAAGATCAGGGAGTCAGATGTCGGCTAATTTCACATCAACAGGGAAACATATCATCTCGG TTGGAGAAGACTCTCAAGTTTATGTCTGGAACTACCACGACCACCACCACACTAGTAACAGCTTGTTAAGCCCTTCGTCGAACAAGCATGTAAAATCCGA GCAGTCTTTCGAGCATTTCTCCTCGCCAGGTGTCTCGGCCGCCACACCATGGCCAGGAACCACCAGGTGCAGCAGGAGCAGTAGCAGCAGGAGGAGAAAT AGTACAAGTAGGAGTAGTAGTTTTCATGGTCAGCATGATCAAAGGCCAGCAAGAGATGTTGTGGAGAGGTTTTCATTGGGGAACTGGTGTCAGTTCATGG ATGGTGGTGGGTTCAGGGGGAACTTGGCGGCGACCTGGCCGGAGGAGAGGCTTCCAGCGGCGGCGCCGGCGGAGGAGGAAGAATGTGGTGGTGGTGAGGC ATGGGGGTTGGTGATTGTGACGGCTAGTTATGATGGGAAGATTACTACTTTTAACAACTATGGGAAGCCAATGCTGCTATGA
AA sequence Show only first row Show all	>Lus10020846 pacid=23177985 polypeptide=Lus10020846 locus=Lus10020846.g ID=Lus10020846.BGIv1.0 annot-version=v1.0 MYEIWVNEPQSVEERRRKFLSQMGISEEVDDHHGHCLLQRMSDHCSEEAEMSSGGFEESESLCSGRDQSVSEANSMANDDDDDDDTEEVEEEEEFECRKS GDEASTSVEKAKMKSWWSWKKFVSSSSEVSSPSSKVKTLAKVKCNKKRYMELTGLLVGQEIQGHKGIIWTMKFSPDGKYLATGGEDGIVRVWRVQTAISE DPSAMSFFADPKKGGSRPPIVVPERVFSIEGSPVHEFRGHSSDVLDLAWSSSNVLLSSSKDKTVRLWRVGCNDCINVFRHGNYVTCIQFNPVNENSFISG SIDGKVRIWGVNEARVIDWTDVRDVISAICYRPDGKEFVVGTFRGTCRFYDVSGQDMQLEVEIHIQGRKRTSCNRITGIQFSQEKAPKVMITSEDSKVRI FDGFDLVHKFKGLTRSGSQMSANFTSTGKHIISVGEDSQVYVWNYHDHHHTSNSLLSPSSNKHVKSEQSFEHFSSPGVSAATPWPGTTRCSRSSSSRRRN STSRSSSFHGQHDQRPARDVVERFSLGNWCQFMDGGGFRGNLAATWPEERLPAAAPAEEEECGGGEAWGLVIVTASYDGKITTFNNYGKPMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48870			Transducin/WD40 repeat-like su...		Lus10020846 [exp]	0	1
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10009336 [exp]	5.4	0.8483
AT5G36250			Protein phosphatase 2C family ...		Lus10012218 [exp]	6.4	0.7588
AT2G16250			Leucine-rich repeat protein ki...		Lus10010823 [exp]	7.9	0.7996
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031892 [exp]	10.9	0.8444
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	12.4	0.8319
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034261 [exp]	13.9	0.8226
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10007650 [exp]	15.9	0.8287
					Lus10005392 [exp]	15.9	0.7847
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013335 [exp]	16.4	0.8253
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10005313 [exp]	21.4	0.8173

Compare expression of checked genes

Lus10020846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.