Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40890 859 / 0 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT1G74550 495 / 2e-172 CYP98A9 cytochrome P450, family 98, subfamily A, polypeptide 9 (.1) AT1G74540 486 / 5e-169 CYP98A8 cytochrome P450, family 98, subfamily A, polypeptide 8 (.1) AT5G07990 313 / 3e-101 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45550 313 / 4e-101 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45560 311 / 2e-100 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G26310 303 / 4e-97 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT4G37430 302 / 7e-97 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT4G37360 300 / 2e-96 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT5G25140 300 / 3e-96 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033524 [exp] 1041 / 0 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10020850 [exp] 808 / 0 AT2G40890 666 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033522 [exp] 664 / 0 AT1G79540 663 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013150 [exp] 358 / 1e-118 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 337 / 2e-110 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017961 [exp] 327 / 2e-106 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019457 [exp] 319 / 2e-103 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017742 [exp] 317 / 2e-102 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021158 [exp] 312 / 2e-100 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G033300 [exp] 907 / 0 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031100 [exp] 837 / 0 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031000 [exp] 815 / 0 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.001G167800 [exp] 360 / 3e-119 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 360 / 3e-119 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 348 / 3e-114 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G040200 [exp] 342 / 2e-112 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066600 [exp] 335 / 2e-109 AT5G07990 382 / 1e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 335 / 2e-109 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 333 / 2e-108 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10020847 pacid=23178007 polypeptide=Lus10020847 locus=Lus10020847.g ID=Lus10020847.BGIv1.0 annot-version=v1.0 ATGGCGCTCCCTCTAATCGCCATCGTCTTCTCCCTCATCGCCGTCCTCCCCTTAGTTTATTCTCTCATCTACCGCCTCCGATTCAAGCTTCCTCCGGGTC CCCGCCCGCTTCCGATCGTAGGGAACCTCTACGACATCAAGCCAGTCAGATTCCGCTGCTTCGCAGAGTGGGCGGACCAGTACGGACCTATTATCTCCGT CTGGTTCGGCTCCACTCTCAACGTCGTCGTTTCCAACACCCAGCTTGCTAAGGAGGTGCTCAAGGAGCACGACCAGCAGCTCGCTGATCGCCACCGGAGC AGGTCGGCCGCGAAGTTCAGCCGCGACGGTCAGGATCTTATTTGGGCCGACTATGGGCCGCACTACGTGAAGGTGAGGAAAGTGTGCACGCTTGAGCTGT TCACTCCCAAGCGATTGGAAGGGCTGCGGCCGATTCGCGAGGATGAGGTCACCGCCATGGTTGAGTCTCTTTACCACGACTGTACCGATTCAGAGAAGAG TGTGCAGGTGAAGAAGTACCTGGGAGCTGTGGCATTCAACAACATCACACGGCTAGCATTTGGGAAGCGGTTTGTGAACTCGGAGGGTGTGATGGACGAA CAAGGACTAGAGTTCAAGGCTGTAGTGTCGAATGGGCTTAAGTTAGGAGCATCACTTTCCATGGCAGAGCATATTGACTGGCTCCGCTGGATGTTCCCAC TAGAAGAAGGTGCGTTCGCCCAGCACGGTGCACGTAGAGACCGCCTTACCCGGGCCATCATGGAAGAACACACCGCTGCTCGCAACAAGAGTGGCAATAC GAAGGAGCATTTCGTTGATGCATTGCTTACATTGAAGGAGAAGTACGATCTCAGCGACGACACAATTATCGGACTTCTTTGGGACATGATCACGGCTGGC ACAGACACGACTGCAATTTCAGCTGAATGGGCTATGGCCGAGATTCTCAAGCACCCAAGGGTTCAACAGAAGCTCCACGACGAGATGGACCGTGTTATAG GCTTTGAACGAGTCATGACTGAATTCGATTTCTCCAGCCTAACTTACCTCCAATGCGTGGTCAAGGAGGCACTCAGGATGCACCCTCCAACCCCGCTAAT GCTCCCTCACCGGTCCAATGCCAACGTGAAGATCGGTGGTTATGACATACCGAAAGGATCAAATGTCCACGTGAACGTCTGGGCAGTGGCACGCGATCCA GCAGTGTGGAAGGATCCATTGGAGTTCAAACCTGAGAGGTTCTTGGAGGAGGATGTGGACATGAAGGGACACGATTATCGGCTGCTCCCATTCGGGGCAG GGAGGCGGGTTTGCCCCGGGGCACAACTAGGGATCAACTTGGTAACGTCTATGTTGGGACACTTGCTGCACCATTTCCAATGGAGTCCGCCAGAAGGTGT GAAGGCAGAGGAGATTGACATGTCGGAGAACCCGGGGCTGGTGACTTACATGCGAACGCCATTGCAGGCTGTGGCTACTCCTCGGCTGCCGTCTCACTTG TACAAACGTGTAGCCGTCGACATGTAA
AA sequence Show only first row Show all	>Lus10020847 pacid=23178007 polypeptide=Lus10020847 locus=Lus10020847.g ID=Lus10020847.BGIv1.0 annot-version=v1.0 MALPLIAIVFSLIAVLPLVYSLIYRLRFKLPPGPRPLPIVGNLYDIKPVRFRCFAEWADQYGPIISVWFGSTLNVVVSNTQLAKEVLKEHDQQLADRHRS RSAAKFSRDGQDLIWADYGPHYVKVRKVCTLELFTPKRLEGLRPIREDEVTAMVESLYHDCTDSEKSVQVKKYLGAVAFNNITRLAFGKRFVNSEGVMDE QGLEFKAVVSNGLKLGASLSMAEHIDWLRWMFPLEEGAFAQHGARRDRLTRAIMEEHTAARNKSGNTKEHFVDALLTLKEKYDLSDDTIIGLLWDMITAG TDTTAISAEWAMAEILKHPRVQQKLHDEMDRVIGFERVMTEFDFSSLTYLQCVVKEALRMHPPTPLMLPHRSNANVKIGGYDIPKGSNVHVNVWAVARDP AVWKDPLEFKPERFLEEDVDMKGHDYRLLPFGAGRRVCPGAQLGINLVTSMLGHLLHHFQWSPPEGVKAEEIDMSENPGLVTYMRTPLQAVATPRLPSHL YKRVAVDM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	0	1
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10033524 [exp]	1.0	0.9739
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	3.2	0.9339
AT1G20950			Phosphofructokinase family pro...		Lus10016047 [exp]	3.7	0.9072
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10009526 [exp]	3.9	0.9296
AT5G56350			Pyruvate kinase family protein...		Lus10013396 [exp]	4.0	0.9048
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	5.3	0.9226
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	5.9	0.9144
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	6.7	0.9044
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	7.3	0.9135
AT3G25130			unknown protein		Lus10038199 [exp]	7.7	0.8667

Compare expression of checked genes

Lus10020847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.