Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40890 638 / 0 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT1G74550 362 / 1e-121 CYP98A9 cytochrome P450, family 98, subfamily A, polypeptide 9 (.1) AT1G74540 351 / 2e-117 CYP98A8 cytochrome P450, family 98, subfamily A, polypeptide 8 (.1) AT4G37340 223 / 2e-67 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37330 220 / 1e-66 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37360 219 / 3e-66 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37370 219 / 5e-66 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT1G01280 219 / 5e-66 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT5G07990 218 / 2e-65 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G36220 213 / 1e-63 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020847 [exp] 770 / 0 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033524 [exp] 770 / 0 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033522 [exp] 478 / 1e-159 AT1G79540 663 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012624 [exp] 223 / 1e-67 AT1G01280 769 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Lus10013150 [exp] 222 / 4e-67 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 220 / 2e-66 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10018717 [exp] 219 / 6e-66 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10021158 [exp] 216 / 9e-65 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017961 [exp] 215 / 2e-64 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G033300 [exp] 659 / 0 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031100 [exp] 614 / 0 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031000 [exp] 592 / 0 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.002G171800 [exp] 234 / 8e-72 AT1G01280 778 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Potri.001G167800 [exp] 230 / 3e-70 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 229 / 8e-70 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.013G073300 [exp] 229 / 9e-70 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 229 / 2e-69 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 220 / 2e-66 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.014G020600 [exp] 218 / 9e-66 AT4G37370 479 / 4e-166 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10020850 pacid=23178006 polypeptide=Lus10020850 locus=Lus10020850.g ID=Lus10020850.BGIv1.0 annot-version=v1.0 ATGGCGCTCCCTCTAATCGCAATCGTCTTCTCCCTCATCGCATCCCTCCCCTTAGCTTACTTTCTCATCTACCGCCTCCGATTCAAGCTTCCTCCGGGTC CCCGTCCGCTCCCGGTCGTCGGAAACCTCTACGACATCAAGCCCGTCAGATTCCGCTGCTTTGCCGAATGGGCGGACCAGTACGGGCCGATTATCTCCGT CTGGTTCGGATCCACGCTCAACGTCGTCGTTTCCAACACCCAGCTTGCTAAGGAGGTACTCAAGGAGCACGACCAGCAGCTCGCTGACCGCCACCGGACC AGGTCGACGGCGAGGTTCAGCCGCGACGGTCAAGATCTGATTTGGGCTGACTATGGGCCGCACTACGTGAAGGTGAGGAAGGTCTGCACGGTTGAGCTGT TCACTCCAAAGCGATTGGAAGGGCTGCGCCCGATTCGAGAGGATGAGGTCACCGCCATGGTTGAGTCCCTTTACCGCGACTGTACCGATTCAGAGAAGAG TGTGCAAGTGAAGAAGTACCTGGGAGCGGTAGCGTTCAACAACATCACACGGCTAGCATTCGGGAAGCGGTTCGTGAACTCGGAGGGTGTGATGGACGAA CAAGGACTAGAGTTCAAGGCCATAGTGTCGAATGGGATTAAGAGAGGAGCATCACTTTCCATGGCAGAGCACATTGACTGGCTCCGCTGGATGTTCCCAC TAGAAGAAGGTGCGTTCGCCCAGCACAACGCCCGTAGAGACCGCCTTACCCATGCCATCATGGAGGAGCACACCGCTGCTCGCAACAAGAGCGGCGATAC GAAGCAGCATTTCGTCGATGCCTTGCTTACATTGAAGGAGAAGTACGACCTCAGCCAGGACACAATCATAGGCCTTCTTTGGGACATGATCACGGCTGGC ACGGACACGACTGCAATTTCAGCGGAATGGGCTATGGCCGAGATTGTCAAGCACCCAAGGGTTCAACAGAAGCTCCACGACGAGATGGACCGTGTTATAG GCTTTGAACGGGTCATGACTGAGTCTGATTTCTCCAGCCTAACTTACCTCCAATGCGTGGTCAAGGAGGCACTCAGGATGCACCCTCCAACCCCGCTAAT GCTCCCTCACCGGTCCAATGCCAACGTGAAGATCGGTGGTTATGACATACCAAAAGGATCCAATGTCCACGTGAACGTCTGGGCAGTGGCACGCGATCCA GCAGTGTGGAAGGATGGGATGCTTTGGAGTTCAAGCGTGAGTGTTTCGGGGAGGAGGATGTGA
AA sequence Show only first row Show all	>Lus10020850 pacid=23178006 polypeptide=Lus10020850 locus=Lus10020850.g ID=Lus10020850.BGIv1.0 annot-version=v1.0 MALPLIAIVFSLIASLPLAYFLIYRLRFKLPPGPRPLPVVGNLYDIKPVRFRCFAEWADQYGPIISVWFGSTLNVVVSNTQLAKEVLKEHDQQLADRHRT RSTARFSRDGQDLIWADYGPHYVKVRKVCTVELFTPKRLEGLRPIREDEVTAMVESLYRDCTDSEKSVQVKKYLGAVAFNNITRLAFGKRFVNSEGVMDE QGLEFKAIVSNGIKRGASLSMAEHIDWLRWMFPLEEGAFAQHNARRDRLTHAIMEEHTAARNKSGDTKQHFVDALLTLKEKYDLSQDTIIGLLWDMITAG TDTTAISAEWAMAEIVKHPRVQQKLHDEMDRVIGFERVMTESDFSSLTYLQCVVKEALRMHPPTPLMLPHRSNANVKIGGYDIPKGSNVHVNVWAVARDP AVWKDGMLWSSSVSVSGRRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020850 [exp]	0	1
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	1.7	0.8704
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10016003 [exp]	5.5	0.8301
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Lus10021965 [exp]	6.3	0.7915
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10017102 [exp]	6.7	0.8116
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10037825 [exp]	7.0	0.8068
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10003971 [exp]	8.1	0.7901
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10022909 [exp]	13.0	0.7817
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10006843 [exp]	16.3	0.8079
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Lus10037608 [exp]	17.3	0.7851
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020849 [exp]	17.3	0.7634

Compare expression of checked genes

Lus10020850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.