Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20630 174 / 6e-55 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G72610 172 / 4e-54 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT1G09560 142 / 2e-42 GLP5 germin-like protein 5 (.1) AT3G05930 142 / 4e-42 GLP8 germin-like protein 8 (.1) AT3G62020 141 / 6e-42 GLP10 germin-like protein 10 (.1.2) AT1G02335 139 / 6e-41 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G26700 137 / 2e-40 RmlC-like cupins superfamily protein (.1) AT5G39160 127 / 2e-36 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 127 / 4e-36 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39130 124 / 3e-35 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020026 [exp] 293 / 2e-101 AT5G20630 190 / 3e-61 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015644 [exp] 288 / 1e-99 AT5G20630 192 / 6e-62 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037663 [exp] 283 / 1e-97 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 277 / 2e-95 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037661 [exp] 271 / 4e-93 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037664 [exp] 222 / 2e-73 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10036296 [exp] 202 / 8e-66 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10010769 [exp] 196 / 3e-63 AT5G20630 283 / 7e-98 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037662 [exp] 191 / 9e-63 AT5G20630 124 / 2e-36 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065266 [exp] 196 / 1e-63 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.001G169000 [exp] 195 / 5e-63 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 183 / 2e-58 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.005G001300 [exp] 145 / 3e-43 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.013G000500 [exp] 141 / 5e-42 AT1G09560 311 / 1e-108 germin-like protein 5 (.1) Potri.011G163800 [exp] 139 / 7e-41 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 137 / 2e-40 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.014G110400 [exp] 137 / 2e-40 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.011G163300 [exp] 137 / 2e-40 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 137 / 4e-40 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10020851 pacid=23177931 polypeptide=Lus10020851 locus=Lus10020851.g ID=Lus10020851.BGIv1.0 annot-version=v1.0 ATGCCGTTTTACCGTCATGAATTGGCCGTCGCCGCCGTACTCTTCCTCCTCCTCCTCCTCTCATGCAGCTACTCCGCACACGCCGCGGATTTCTGCGTAG CCGATCTATCTCTACACACCGCATCCGGCTTTGCGTGCAAGGACCCCGCCAAAGTTACCGCCGGCGACTTCATCTTCACCGGATTAGCCCAACCAGGCAA CACCAGTACTAATCCCTTCGGGGCAGTTGCTGCCTTGGCCATCGTCCAGCAATTCCCGGCCGTGAATGGCCTGGGAATCTCAATGGCCCGTGCAGATTTC GCTCCCGGCGGAGTGTTCCCGGTGCACACCCACCCGGCGGCGACGGAGATGATCTACCTGCTGGAGGGGACCCTCACGGCGGGGTTTATCACCGGCGGGA CGAACAAGGTGTATCTGAATACGATCAAAAAGGGGGAAGTGGCGGTGTTCCCCAAAGGGTTACCGCATTTCGTAGCGAATGCCGACACCACCAGTCCCGC TGTGGTGCTGGTGGCGTTCAGCAGTCCGGAACCGGGGTTTGTGTTGTTCAATTTAGCTCTCTTTGGGAATGATCTTCCGTCGGCGTTGGTGGAGAAGTCC ACCGGCATTGCTCAATCTGAAGTGAAAAGGCTCAAAGCTCTTTTCGGTGGTTCTGGCTAA
AA sequence Show only first row Show all	>Lus10020851 pacid=23177931 polypeptide=Lus10020851 locus=Lus10020851.g ID=Lus10020851.BGIv1.0 annot-version=v1.0 MPFYRHELAVAAVLFLLLLLSCSYSAHAADFCVADLSLHTASGFACKDPAKVTAGDFIFTGLAQPGNTSTNPFGAVAALAIVQQFPAVNGLGISMARADF APGGVFPVHTHPAATEMIYLLEGTLTAGFITGGTNKVYLNTIKKGEVAVFPKGLPHFVANADTTSPAVVLVAFSSPEPGFVLFNLALFGNDLPSALVEKS TGIAQSEVKRLKALFGGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10020851 [exp]	0	1
					Lus10011588 [exp]	1.0	0.8919
AT5G42905			Polynucleotidyl transferase, r...		Lus10005922 [exp]	2.4	0.8057
					Lus10003223 [exp]	3.0	0.7364
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10032256 [exp]	7.3	0.6722
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10043320 [exp]	11.0	0.6647
AT1G27180			disease resistance protein (TI...		Lus10040576 [exp]	14.1	0.7290
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10029090 [exp]	16.4	0.6148
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10028002 [exp]	19.8	0.6524
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10007965 [exp]	22.9	0.6970
AT5G04480			UDP-Glycosyltransferase superf...		Lus10017452 [exp]	25.9	0.6869

Compare expression of checked genes

Lus10020851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.