Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79540 665 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 246 / 2e-70 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 245 / 3e-70 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 242 / 2e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G17140 226 / 1e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 220 / 3e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 218 / 2e-61 RPF2 rna processing factor 2 (.1) AT1G62930 213 / 1e-59 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 214 / 8e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06710 214 / 4e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033522 [exp] 1448 / 0 AT1G79540 663 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 246 / 1e-70 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 246 / 2e-70 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 247 / 1e-69 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 236 / 9e-67 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 225 / 8e-62 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 225 / 2e-61 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 220 / 3e-61 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 218 / 3e-60 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G049400 [exp] 791 / 0 AT1G79540 787 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 234 / 1e-66 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 232 / 1e-65 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 226 / 2e-64 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G015900 [exp] 228 / 3e-64 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 225 / 2e-63 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 223 / 3e-63 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G105400 [exp] 225 / 7e-62 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 221 / 1e-61 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G013300 [exp] 221 / 1e-61 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020852 pacid=23177972 polypeptide=Lus10020852 locus=Lus10020852.g ID=Lus10020852.BGIv1.0 annot-version=v1.0 ATGCAACTCCTGTTCCTGCTTCACCGGATCTCGCATCGGAAGCTTCCATGGATCAACTACTTCCATGCAGCTTCCTCGTTATCAGAAACCACTGTATCAA ATGAAATCGTATCGATTATCGAGACTGTCAATCCGATGGAGCCGGAGCTGGACGCCATGGTTCCTTTCCTCTCCCCTGCTGACGTAACTTCCGTCATTCA AGACCCGCCCACTCCGCAATTAGGTTTCCGATTCTTCATCTGGGCGTCCAGATACAAGCGTTTCCGCACTTGGGAATCTCGGGACGTCATACTCCGGATG CTGAGCGAAGAGAGAGGTATCGAATTGTACAATCAGGTTTTGGACGAAATGAAGAGCTGGAAACTCGAGGTTCCACCTGAGGCTTTCTCAGTTTTGATTC AAGCTTATGAGAAGAAAGGCATGGCTGAGAAGGCTGTGGAATCTTTTGGGGTGATGCGAGATTTCGATTGTAAGCCAGATGTTCTTACTTACAATGCATT TCTGAAGACTCTGTTGCGGAAAGGGGTTTCTTTACTTGCTGTAGCTGTTTACCATCAAATGTGGAACCTGAATTGCATTCCCAATAGGACTACTTTCACC ATCTTGATTGGTGGATTGTTTAAGTGTGGGGAGAGGAAAAGCGCACTCCAGGTGTTCGATATAATGGGGAAGAGGGGGATCCTGCCTGATAAAATCGTAT ACACCATGGTCATTTCGGCTTGGTGCCAGGCCCAGAGGGTTGATGTTGCACATAGGTTGCTTGATGAGATGAGAAGTAAAGGCTGCGAACCCGATTCCGC TACTTTTAATGCTTTGCTTACTGGATATTGTAAGTTAGGTAGAGTAGATGAAGCTCTCGATTCCTTGACATCCTTTCGTAAAGAAGGATATGTACTCGAC GCTCGTGGATATAGCTGTCTGATTGACGGGCTCATTAGGGCTAAAAGATACGAAGAAGCAGATACATGGCATCGTGAAATGATCGAGAATCACAATACTC CCGATGTTGTCTTATACACTGTATGGATTAAAGGCTTGTTGAATGCAGGAAAGGCGAGCAAGGCTTTAAAGTTGTTGAATGAGATGTCGAAGAGTGCTCC GGTTCCTGATATTCAATGTTATAATGTTGTGATCAAAGGCCTTTGCGATATTGGGCTTCTTAATGTAGCAAAGGCGCTTTCTTTGAAGATCTCGAAGCAT GGATATTTGCCTTCTGCTTATACACACACGATCCTTATTAGCAGGATGAGCAAGAATGGGATGACTGTAGAAGCTCAACGACTGTTTGACTATATGGGTA AAGTTGGATGCTTTCCTTCTGTGGTTGCATTTAATGCACTTATTGATGGTCTGTGTCGATCAGGGAAACTTGACGAAGCATTACGCAGAAAGGAGATGAG GAATGATTTTCTGTCTATGCGACTCTCGGGTCTTGGTCGTGATAGCATGAAGAAAATACAGGAAAATTATGAACCTGGTTTGATTCTGAAGGTATACAAC ACTCTTCTGCAACTTGACAAGAAAGTTGTACCTGACATTAGGACTTATAACATTTTGATAAACTATTGCTGCAAAGCAGGGAACATTGATGAAGCTTATA GGCTCTTCAATGAGCTGCCGCTTAGTGGTCTAGCACCGGATTCTGTGACATATGGAACCCTGATAAATGGGCTTTTACGGCTGGGAAGACAAAAGGAAGC TGATCAAATGGTTAAGCAAATGTCGAGTAGTGGTTGTTTACCAAGTACAGCAGTGTATAAATCACTTATGACTTGGTCATGCAGGGGAAAGAATGTGACT TCAGCCTTTAGTCTTTGGTTAAAGTATCTGAGGAGCGTTGCTGCCAGGGAGACTGGTGCAATCGAAAAGATAGAAGAGCTCTTTCAGAATGGAGAAACTG TAGTAGCAATTCAAAGCTTACTTGAGATGGACCTGAGGCTGAATGATTTTCAGTTAGCCCCATATATGATCTGGTTAATTGGGCTGTGTCAGTCCGGAAG AATAGAAGAAGCGTCTACGGTATTCTCTGTTCTTGATAAATGCAACGTTGTTATTACTCCGCCAAGCTGTGTAAACTTAATAGAAGGTCTTTGCAGACAA GGGAAACTAGACCTTGCAGTTGGTGTTTTCAATTACACAATTGAAAAGGGCTTTTTGTTGAAGCCTCGAATTTGCAACCAGCTACTTAAATCCCTTCTTC GCTCGAAAGATGTACCCACTACGCAACCGGTTTTTGGGCTGTGGGATTGGGTACTTTCCGTTACCCGGTTGGCCAACCCTCCTCGTTAA
AA sequence Show only first row Show all	>Lus10020852 pacid=23177972 polypeptide=Lus10020852 locus=Lus10020852.g ID=Lus10020852.BGIv1.0 annot-version=v1.0 MQLLFLLHRISHRKLPWINYFHAASSLSETTVSNEIVSIIETVNPMEPELDAMVPFLSPADVTSVIQDPPTPQLGFRFFIWASRYKRFRTWESRDVILRM LSEERGIELYNQVLDEMKSWKLEVPPEAFSVLIQAYEKKGMAEKAVESFGVMRDFDCKPDVLTYNAFLKTLLRKGVSLLAVAVYHQMWNLNCIPNRTTFT ILIGGLFKCGERKSALQVFDIMGKRGILPDKIVYTMVISAWCQAQRVDVAHRLLDEMRSKGCEPDSATFNALLTGYCKLGRVDEALDSLTSFRKEGYVLD ARGYSCLIDGLIRAKRYEEADTWHREMIENHNTPDVVLYTVWIKGLLNAGKASKALKLLNEMSKSAPVPDIQCYNVVIKGLCDIGLLNVAKALSLKISKH GYLPSAYTHTILISRMSKNGMTVEAQRLFDYMGKVGCFPSVVAFNALIDGLCRSGKLDEALRRKEMRNDFLSMRLSGLGRDSMKKIQENYEPGLILKVYN TLLQLDKKVVPDIRTYNILINYCCKAGNIDEAYRLFNELPLSGLAPDSVTYGTLINGLLRLGRQKEADQMVKQMSSSGCLPSTAVYKSLMTWSCRGKNVT SAFSLWLKYLRSVAARETGAIEKIEELFQNGETVVAIQSLLEMDLRLNDFQLAPYMIWLIGLCQSGRIEEASTVFSVLDKCNVVITPPSCVNLIEGLCRQ GKLDLAVGVFNYTIEKGFLLKPRICNQLLKSLLRSKDVPTTQPVFGLWDWVLSVTRLANPPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79540			Pentatricopeptide repeat (PPR)...		Lus10020852 [exp]	0	1
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10037748 [exp]	3.9	0.9473
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010375 [exp]	8.5	0.9315
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016882 [exp]	8.7	0.9403
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	8.7	0.9377
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Lus10028660 [exp]	13.4	0.9265
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10000430 [exp]	14.4	0.9173
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	15.5	0.9154
AT1G71820		SEC6	SEC6 (.1.2)		Lus10020177 [exp]	15.6	0.8794
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10013841 [exp]	16.2	0.8859
AT5G19400		SMG7	Telomerase activating protein ...		Lus10036041 [exp]	16.6	0.8981

Compare expression of checked genes

Lus10020852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.