Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56840 276 / 4e-91 FAD-dependent oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033520 [exp] 382 / 2e-133 AT3G56840 506 / 4e-178 FAD-dependent oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G026100 [exp] 310 / 8e-105 AT3G56840 534 / 0.0 FAD-dependent oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10020854 pacid=23177950 polypeptide=Lus10020854 locus=Lus10020854.g ID=Lus10020854.BGIv1.0 annot-version=v1.0 ATGTTGCGTTCGTCACTAGCATCCACCGTCATCGACATGCCTCACTTTGGCAAGCCACCGACGCTAGCTCCGGGGAGTAACAACCCTAAATCGTCGGCAG CCGATTCACGAAAGATGTCAACCCTGGAGACCAAGAGACTCCACCCTAGTGTGCAACTGGATCCAGAGTTTGTGCTTGCTCCTAAGCTTGTGGTGAACTC TGCTGGATTGAGTGCTATACCCCTTGCAAGGAGATTTGACGGCATAAGTGGCGTAGTGATTCCTCCTGCACATTTTGCTCGTGGGCTGTACTTCACCCTG TCGAATACTAGGGAACCTCCTTTCAAGCATTTGATATACCCTACACCAGAGGATGGTGGTTTAGGTGTGCACGTTACTCTTGATTTGGATGGTCAGGTTA AGTTTGGCCCCAATGTTGAATGGATCCGAGCGATCGATGATGTTGCGAGCTTTCTAGATCAGTACGATTACTCTGTAGATACAAGTCAAGCAGAGAGATT TTATCCTGAGATAAGGAAGTACTATCCAAATCTGAAGGATGGATCATTAGAGCCAGGTTATTCAGGGATTCGACCGAAAGTAACTGGCCCTGGCGAGGCT GCTGGTGACTTCATAATACAGGGAGAGAATAGCCATGGAGTTCCTGGACTTGTGAACCTCTTTGGAATCGAGTCTCCTGGCCTGACCTCAAGCATGGCTA TCGCTGAGTACATCTCTAACAGATATCTGAAGTGA
AA sequence Show only first row Show all	>Lus10020854 pacid=23177950 polypeptide=Lus10020854 locus=Lus10020854.g ID=Lus10020854.BGIv1.0 annot-version=v1.0 MLRSSLASTVIDMPHFGKPPTLAPGSNNPKSSAADSRKMSTLETKRLHPSVQLDPEFVLAPKLVVNSAGLSAIPLARRFDGISGVVIPPAHFARGLYFTL SNTREPPFKHLIYPTPEDGGLGVHVTLDLDGQVKFGPNVEWIRAIDDVASFLDQYDYSVDTSQAERFYPEIRKYYPNLKDGSLEPGYSGIRPKVTGPGEA AGDFIIQGENSHGVPGLVNLFGIESPGLTSSMAIAEYISNRYLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56840			FAD-dependent oxidoreductase f...		Lus10020854 [exp]	0	1
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10013357 [exp]	4.1	0.8455
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10031369 [exp]	8.1	0.8380
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	8.5	0.8301
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	13.0	0.8174
AT3G48195			Phox (PX) domain-containing pr...		Lus10001233 [exp]	16.4	0.8160
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10011536 [exp]	17.7	0.8220
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10016817 [exp]	20.0	0.8295
AT3G20720			unknown protein		Lus10011166 [exp]	22.2	0.8029
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10039472 [exp]	24.3	0.7766
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Lus10024709 [exp]	24.7	0.7915

Compare expression of checked genes

Lus10020854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.