Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49180 333 / 4e-111 protein kinase family protein (.1.2) AT2G37840 255 / 4e-77 Protein kinase superfamily protein (.1.2) AT3G53930 247 / 3e-74 Protein kinase superfamily protein (.1.2) AT3G61960 241 / 4e-73 Protein kinase superfamily protein (.1.2) AT2G30360 146 / 4e-39 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT5G21326 141 / 3e-37 Ca2+regulated serine-threonine protein kinase family protein (.1) AT3G29160 140 / 3e-37 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT3G01090 142 / 5e-37 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT1G30270 141 / 6e-37 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G39440 139 / 5e-36 SnRK1.3 SNF1-related protein kinase 1.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033518 [exp] 503 / 3e-179 AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) Lus10005135 [exp] 257 / 1e-78 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030182 [exp] 254 / 9e-78 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021493 [exp] 254 / 1e-76 AT2G37840 848 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022593 [exp] 246 / 1e-73 AT2G37840 855 / 0.0 Protein kinase superfamily protein (.1.2) Lus10003026 [exp] 218 / 8e-68 AT2G25010 45 / 4e-05 Aminotransferase-like, plant mobile domain family protein (.1) Lus10016306 [exp] 213 / 1e-66 ND / Lus10015869 [exp] 162 / 1e-47 AT1G48120 44 / 3e-05 hydrolases;protein serine/threonine phosphatases (.1) Lus10003952 [exp] 150 / 4e-43 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G011600 [exp] 369 / 2e-126 AT1G49180 352 / 9e-121 protein kinase family protein (.1.2) Potri.019G007200 [exp] 368 / 3e-126 AT1G49180 353 / 1e-121 protein kinase family protein (.1.2) Potri.019G011300 [exp] 353 / 2e-120 AT1G49180 331 / 2e-113 protein kinase family protein (.1.2) Potri.016G104900 [exp] 251 / 6e-76 AT2G37840 850 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G092900 [exp] 249 / 4e-75 AT2G37840 874 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G181000 [exp] 246 / 2e-74 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G107000 [exp] 246 / 3e-74 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G222600 [exp] 142 / 1e-37 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.018G019900 [exp] 142 / 3e-37 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.019G048800 [exp] 141 / 4e-37 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10020855 pacid=23178013 polypeptide=Lus10020855 locus=Lus10020855.g ID=Lus10020855.BGIv1.0 annot-version=v1.0 ATGGTATGGAAGGCGGAGAAGAAGGTATCGGGGGAAACGGTGGCAGTGAAGCAAGTTCGACTTTCGAAGCTCAACAAGCATCTCAAAGACTGTCTGGATT GCGAGCTCAGCTTCTTGCCCTCCGTCAACCATCCCAATATCATTCGCCTCTTCCATGTCTTCCAGGTTGATGGTTCTATGTTCCTGGTACTGGAATTCTG CGACGGGGGAGATTTAGCTGCTTATGTTAAAGACCATGGAAGAATTCAAGAGAAGACTGCTCGAAGATTCATGCAACAGCTAGGGGCTGGTTTAGAAGTG CTAAACAGCCACCATATCGTTCACAGAGACTTGAAACCAGAGAATATCCTACTGAGTGGGCAAGGGGGCGATCTGGTTCTCAAGATCGCTGATTTCGGGT TATCAAGAAGAATGCATCCGGTAAAGCACGCAGAGACAGTCTGTGGATCTCCATTGTATATGGCTCCAGAAGTTCTACAATTCCAGCGGTATAGTTCTAA GGTCGATATGTGGAGCATTGGCGCAATTCTTTTCGAGCTCCTCAAGGGTTACCCACCTTTCCGTGGCAGAACTAATGTCCAGTTGCTGCAGAATATCAAG TTATCTGCGGAACTGCCTTTTTCTAGACTAATACTTCCAGGACTGCATCCTGACTGCATCGAAATATGTTCGAAACTGCTCTCTCAAAACCCAGGTTTGC TAATTGATATGATTGGAGTTGTTCACCTTCGTGTATTTTCTGCTATAAACCAAAGTGTTGAGCTTGGTTCCTTTTTACAGCGTGTAATGTGGTGCAACTG TTCCATTTCCATGGCTGCAGAGCACAGGTTATCATTTGAAGAGTTTTACCGTCATCGATTCTTGCGGGGCAAGGAAATGGATTTGACGAGTCCAACCTGC AATCTTACCTACAGTATAGGAGAAAGAGAGACTGAGATCCTTTCCTGGAAACGATACTGGTCTCTTGTAGCAAAGCAACTCCTGTACAGTACACAGTTCC CTCACCGGTGCAAGACTGGTGAGGCTCTTGCTGGGAGGTGGGACCCTACGAGAGCGATTGGCAAGGGACGAGGTGTTGATGACAGGCTGGTTCATCTTCG TGCTCAGTTAGATGGGCTGACACATGCACATGTGGAGTGGCTTCCCTTCACCCCTACTCCAGATTACGGTGACACCGTCCGATCATGCTATTTTGGAGGG ATTCACGCGTTTGACATCATTGAGCCGCATGATCCCGTTCGTGTCCTTTGTCAGTATGGGTACCAGCAGGTGATTCCCCACCCACCTTTGATGCCAGAGG TTGCTGTCAGGCCTGCTGATGGCATATTGTATGATGTGCGCCACTCGAGGTGCAATTTCAGCCATTTCGGTGCTTTGGCATAA
AA sequence Show only first row Show all	>Lus10020855 pacid=23178013 polypeptide=Lus10020855 locus=Lus10020855.g ID=Lus10020855.BGIv1.0 annot-version=v1.0 MVWKAEKKVSGETVAVKQVRLSKLNKHLKDCLDCELSFLPSVNHPNIIRLFHVFQVDGSMFLVLEFCDGGDLAAYVKDHGRIQEKTARRFMQQLGAGLEV LNSHHIVHRDLKPENILLSGQGGDLVLKIADFGLSRRMHPVKHAETVCGSPLYMAPEVLQFQRYSSKVDMWSIGAILFELLKGYPPFRGRTNVQLLQNIK LSAELPFSRLILPGLHPDCIEICSKLLSQNPGLLIDMIGVVHLRVFSAINQSVELGSFLQRVMWCNCSISMAAEHRLSFEEFYRHRFLRGKEMDLTSPTC NLTYSIGERETEILSWKRYWSLVAKQLLYSTQFPHRCKTGEALAGRWDPTRAIGKGRGVDDRLVHLRAQLDGLTHAHVEWLPFTPTPDYGDTVRSCYFGG IHAFDIIEPHDPVRVLCQYGYQQVIPHPPLMPEVAVRPADGILYDVRHSRCNFSHFGALA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49180			protein kinase family protein ...		Lus10020855 [exp]	0	1
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Lus10019974 [exp]	2.8	0.8783
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	7.5	0.8945
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10015229 [exp]	7.5	0.8810
AT5G41240		GST10B, ATGSTT2	glutathione S-transferase THET...		Lus10000606 [exp]	10.8	0.8740
AT5G64500			Major facilitator superfamily ...		Lus10002935 [exp]	11.2	0.8642
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	12.2	0.8903
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10037157 [exp]	12.6	0.8651
AT3G62140			unknown protein		Lus10038035 [exp]	13.0	0.8814
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	14.3	0.8817
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	15.4	0.8916

Compare expression of checked genes

Lus10020855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.