Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034819 [exp] 179 / 7e-58 ND / Lus10012435 [exp] 139 / 2e-41 ND / Lus10021810 [exp] 122 / 8e-35 ND / Lus10025328 [exp] 100 / 4e-26 ND / Lus10010051 [exp] 103 / 6e-26 ND / Lus10018976 [exp] 98 / 1e-24 ND / Lus10016146 [exp] 95 / 1e-24 ND / Lus10033217 [exp] 91 / 4e-22 ND / Lus10008250 [exp] 89 / 1e-21 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020856 pacid=23177994 polypeptide=Lus10020856 locus=Lus10020856.g ID=Lus10020856.BGIv1.0 annot-version=v1.0 ATGATTTGGGATCCGCCTTACGGTATGCTGAACACGGAAGTTAGTTTGTGGGCGATTCAGTTGTTGGATGAAGATCGGAAATCGGTACGGTCCTGTACGT GTGTTTTGCGCCCGACGAAAGGCCTTCCTTGTAGACATGAAGTACAACGATGTTTGGATGTTGGACAGTTGCCGCAGCACNNNNNNNNNNNNNNNNNNCC TCATGGATCATGCGGGAACGATCACTGGATGTGGGATGCCGATCTGTTTGAATTTGCTTTCATGTACAATTGCGTTATCGTGGTGTATTCATCTACGCGG AGACCGGTTCAACTCCACACATATGGTTCTACGTACTTACCTATTTCATGCGACGGTCCAGTTGAGCGACTGGATGCTACAATAGAACTCGTTTGTACCG GGAACCATTGGGTCCTAATACAGTTAGCCGAGGATGAAGGTGAGCGACCACTTCCAGATTTCAGCCAAGTTAATCGGATGGTCCAGGGTGTAGAACTGAT GACATTATGGGAAACGCTATATCGAGCTAAACGAGCACTATTTGTATGA
AA sequence Show only first row Show all	>Lus10020856 pacid=23177994 polypeptide=Lus10020856 locus=Lus10020856.g ID=Lus10020856.BGIv1.0 annot-version=v1.0 MIWDPPYGMLNTEVSLWAIQLLDEDRKSVRSCTCVLRPTKGLPCRHEVQRCLDVGQLPQHXXXXXXPHGSCGNDHWMWDADLFEFAFMYNCVIVVYSSTR RPVQLHTYGSTYLPISCDGPVERLDATIELVCTGNHWVLIQLAEDEGERPLPDFSQVNRMVQGVELMTLWETLYRAKRALFV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020856 [exp]	0	1
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10011322 [exp]	7.7	0.7058
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10010776 [exp]	7.9	0.6993
					Lus10030082 [exp]	17.6	0.6656
					Lus10030256 [exp]	22.1	0.6169
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	29.2	0.6024
					Lus10022805 [exp]	30.6	0.6024
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10031433 [exp]	31.5	0.5274
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	31.9	0.6024
AT3G13910			Protein of unknown function (D...		Lus10016853 [exp]	33.2	0.6024
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007434 [exp]	34.5	0.6423

Compare expression of checked genes

Lus10020856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.