Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26420 150 / 4e-41 FAD-binding Berberine family protein (.1) AT1G26380 149 / 7e-41 FAD-binding Berberine family protein (.1) AT1G26400 147 / 3e-40 FAD-binding Berberine family protein (.1) AT4G20820 143 / 1e-38 FAD-binding Berberine family protein (.1) AT1G26390 141 / 4e-38 FAD-binding Berberine family protein (.1) AT5G44440 141 / 6e-38 FAD-binding Berberine family protein (.1) AT5G44410 141 / 6e-38 FAD-binding Berberine family protein (.1) AT4G20840 139 / 4e-37 FAD-binding Berberine family protein (.1) AT1G26410 137 / 1e-36 FAD-binding Berberine family protein (.1) AT1G11770 135 / 6e-36 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038436 [exp] 160 / 7e-45 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 157 / 7e-44 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 156 / 3e-43 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 141 / 6e-38 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10021289 [exp] 141 / 8e-38 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1) Lus10026775 [exp] 141 / 8e-38 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10038437 [exp] 141 / 9e-38 AT1G26380 484 / 2e-167 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 139 / 1e-37 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 139 / 4e-37 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158100 [exp] 179 / 6e-52 AT5G44440 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462000 [exp] 171 / 4e-49 AT5G44440 520 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461800 [exp] 171 / 6e-49 AT5G44440 516 / 1e-179 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 170 / 1e-48 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461500 [exp] 168 / 5e-48 AT4G20820 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G157900 [exp] 168 / 5e-48 AT5G44440 546 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461700 [exp] 168 / 5e-48 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 168 / 9e-48 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462100 [exp] 166 / 7e-47 AT4G20820 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G464700 [exp] 160 / 4e-45 AT5G44440 484 / 4e-167 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10020858 pacid=23177910 polypeptide=Lus10020858 locus=Lus10020858.g ID=Lus10020858.BGIv1.0 annot-version=v1.0 ATGATATCAACGACGACGACGAAGACTGCATCACTTCTCATTCTTTTCCTGCTGCCTTTCATTCAGGTCGATTTGATAGCCGATTTCCTAAAATGCATTT ATGCAAACTCCTCCTCTGTGGCCGCCGCCGCAGAAAACGTCGTCTTCTCCTCCACCGACGACGACACCACCCCCTTCTCCTGCGTTCTCCACTCCTCGAT CCGGAACAAGAGGTTCGAGACAACCGCGACCCTGATGCCTTTGGTCGTCATCAGGCCAACAGACTTCACCCACGTGGCACCGGTCGTCGTCTGCGCCAAA ACGCACGGCCTCCACCTCAGAGTAAGAAGCGGCGGACACGATTACGAGGGGCTATCATACGTGTCCCTTTGTCCGTCGGTCCTCCTCGATCTGCTCGTCC TCTCCGACGTCACCGTCGACGCTGCTTCCAAGATGGCCTGGATACAATCCGGAGCCACGGTGGGACAAGCATACTTCTTTATCGGACAGGCGAGCAGCAC CCTGGCGTTTCCTGCTGGACTGTCCGCTACTGTCGGGAAAGGCGGCCAGCTCAGCGGCGGCGGAATGGGGACGCTGCTCCGCTATGCCGGCATGGGAGGG ACAGCCGACCGCGTAACTGACGTGGTCGTTGTGGACTCGGAAGGACGTGTACGAGACAGAAAATCCCTCGGAGAAGACGTTTTCTGGGCCGTACGAGGCG GCGGCGGAAACACATTCGGGGTGGTTCTGGCATGGAAGGTTGACCTTGTTCCGGTGCCCGGAATCCTCATCGTTGGCAGCGTGTCCACAAATATGGAAAA AAAACGGCGAACGGTGGCTGGTCAAGTGGTAACAAGTCGCTTCCACGTTGCCCAACAAAATGTTCATCCAAGTCGTCATTTACAAGCCAAGCACCGGGAC CATGACGTCATCGCTTACCGTAACGGTCAAAATCTTGTACGTCGGACCGGCTGA
AA sequence Show only first row Show all	>Lus10020858 pacid=23177910 polypeptide=Lus10020858 locus=Lus10020858.g ID=Lus10020858.BGIv1.0 annot-version=v1.0 MISTTTTKTASLLILFLLPFIQVDLIADFLKCIYANSSSVAAAAENVVFSSTDDDTTPFSCVLHSSIRNKRFETTATLMPLVVIRPTDFTHVAPVVVCAK THGLHLRVRSGGHDYEGLSYVSLCPSVLLDLLVLSDVTVDAASKMAWIQSGATVGQAYFFIGQASSTLAFPAGLSATVGKGGQLSGGGMGTLLRYAGMGG TADRVTDVVVVDSEGRVRDRKSLGEDVFWAVRGGGGNTFGVVLAWKVDLVPVPGILIVGSVSTNMEKKRRTVAGQVVTSRFHVAQQNVHPSRHLQAKHRD HDVIAYRNGQNLVRRTG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10020858 [exp]	0	1

Compare expression of checked genes

Lus10020858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.