Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49230 191 / 1e-60 RING/U-box superfamily protein (.1) AT1G49220 169 / 1e-51 RING/U-box superfamily protein (.1) AT1G49210 165 / 2e-50 RING/U-box superfamily protein (.1) AT1G49200 163 / 7e-50 RING/U-box superfamily protein (.1) AT3G18773 160 / 8e-49 RING/U-box superfamily protein (.1) AT5G05280 136 / 4e-40 RING/U-box superfamily protein (.1) AT3G10910 124 / 2e-35 RING/U-box superfamily protein (.1) AT1G20823 115 / 2e-31 RING/U-box superfamily protein (.1) AT1G76410 113 / 8e-31 ATL8 RING/U-box superfamily protein (.1) AT5G01880 108 / 3e-29 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033515 [exp] 253 / 7e-85 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10006788 [exp] 201 / 1e-64 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10005814 [exp] 200 / 3e-64 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10005817 [exp] 198 / 3e-63 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10006785 [exp] 187 / 4e-59 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10005815 [exp] 167 / 2e-51 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10006787 [exp] 161 / 4e-49 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10006786 [exp] 159 / 2e-48 AT1G49230 176 / 9e-56 RING/U-box superfamily protein (.1) Lus10005816 [exp] 157 / 6e-48 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G309600 [exp] 204 / 5e-66 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 203 / 2e-65 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 170 / 1e-52 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 146 / 2e-43 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 142 / 7e-42 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 135 / 2e-39 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 133 / 1e-38 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 121 / 4e-34 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 120 / 2e-33 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 118 / 4e-33 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10020859 pacid=23177971 polypeptide=Lus10020859 locus=Lus10020859.g ID=Lus10020859.BGIv1.0 annot-version=v1.0 ATGTCTTCCTCAGCAACTAATCAGCTCTTACTTCAACTCACTCCAGCCAGAAGACTCCTCCTCGTCGACCACCACCCCTCTCCCCCGCCGTACAACAACA ACAACAACAGCGACAACACATTCGACGCCAACGTCGTAATGGTCCTCTCCGTCCTCCTCTGCGCTCTTATCTGCTCTCTAGGTCTCAACTCAATTATCCG CTGCGCATTGAGATGCTCCAATTTGTCCAATTCTTCCTCCTCCTCCGACCACCACCGCCTGTCGTCAGCGGCCAGATTGGCGAACACCGGGATTAAAAAG AAGGCGCTCAAGACTTTCCCGGTGGTCAGATTTTCTGACGAGTTGAACCTACCGGGGTTGGATGCAGAGTGCGTCATCTGCCTCTCGGATTTCGCCGCCG GCGAGAAGGTCAAGATTCTGCCCAAATGTAATCATGGGTTCCATGTCAAGTGTATCGATAGGTGGCTTAGGTCCCACTCTTCTTGCCCGACTTGCCGCCA CTGCTTGATTGAGACCTGCCAGAAGATCGTAGATTTCGGTGGTGTTAGGCCGGTGGCGGTGACGGCGGCGCCGGTGGTGGAGGTCGTTATTAATTCATCT TCTGCTTCTCCGGAGGTGGAGGTGGTTTCGTCGTCATCTAATGGTGCGGGAGATAATTCTTCAGCTACGCCGGCTGTGGCATCGCCTGAGGTGGAAGCAG TTGTTGTTATCAGTATGCCGCCGTTGGAACCGGAAGGGCCGGTACGGGATTACCGGGGAACTTGCTAA
AA sequence Show only first row Show all	>Lus10020859 pacid=23177971 polypeptide=Lus10020859 locus=Lus10020859.g ID=Lus10020859.BGIv1.0 annot-version=v1.0 MSSSATNQLLLQLTPARRLLLVDHHPSPPPYNNNNNSDNTFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLSNSSSSSDHHRLSSAARLANTGIKK KALKTFPVVRFSDELNLPGLDAECVICLSDFAAGEKVKILPKCNHGFHVKCIDRWLRSHSSCPTCRHCLIETCQKIVDFGGVRPVAVTAAPVVEVVINSS SASPEVEVVSSSSNGAGDNSSATPAVASPEVEAVVVISMPPLEPEGPVRDYRGTC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49230			RING/U-box superfamily protein...		Lus10020859 [exp]	0	1
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	3.6	0.9583
AT3G26340			N-terminal nucleophile aminohy...		Lus10006426 [exp]	5.9	0.9359
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10009992 [exp]	7.6	0.9468
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	11.1	0.9403
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	11.9	0.9428
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	13.0	0.9385
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016318 [exp]	13.1	0.8768
AT3G26340			N-terminal nucleophile aminohy...		Lus10011369 [exp]	15.8	0.9292
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	16.3	0.9267
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	16.4	0.9387

Compare expression of checked genes

Lus10020859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.