Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09820 268 / 2e-90 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) AT4G22240 69 / 2e-13 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G26070 65 / 2e-12 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G04020 64 / 1e-11 FIB fibrillin (.1) AT2G35490 55 / 8e-09 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G23400 54 / 3e-08 FIB4 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G00030 51 / 9e-08 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G26080 50 / 2e-07 plastid-lipid associated protein PAP / fibrillin family protein (.1) AT5G19940 43 / 7e-05 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033514 [exp] 457 / 6e-166 AT5G09820 270 / 3e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10020982 [exp] 68 / 3e-13 AT3G26070 265 / 1e-89 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10001099 [exp] 68 / 4e-13 AT4G22240 362 / 5e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10014790 [exp] 67 / 8e-13 AT4G22240 363 / 2e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10030987 [exp] 57 / 3e-09 AT2G35490 354 / 5e-121 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10035384 [exp] 56 / 6e-09 AT2G35490 357 / 5e-122 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10020912 [exp] 55 / 7e-09 AT4G00030 276 / 2e-94 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10021209 [exp] 52 / 7e-08 AT3G23400 305 / 4e-104 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10011803 [exp] 49 / 7e-07 AT3G23400 307 / 5e-105 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G309300 [exp] 302 / 6e-104 AT5G09820 268 / 7e-90 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Potri.004G003200 [exp] 71 / 2e-14 AT4G22240 380 / 1e-132 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G209600 [exp] 64 / 5e-12 AT3G26070 253 / 7e-85 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.003G020700 [exp] 64 / 5e-12 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.003G095900 [exp] 54 / 3e-08 AT2G35490 334 / 5e-113 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.014G058400 [exp] 52 / 5e-08 AT4G00030 282 / 2e-97 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G137900 [exp] 52 / 1e-07 AT2G35490 301 / 3e-100 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.008G169100 [exp] 44 / 4e-05 AT3G23400 267 / 2e-89 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10020860 pacid=23177960 polypeptide=Lus10020860 locus=Lus10020860.g ID=Lus10020860.BGIv1.0 annot-version=v1.0 ATGGCGTTTACTCATTCACAACCATGGACAATGAATAATCAGCAGCAGCAGGGCAAGAGTGGAATCAAAGTTGCACCACAGAGTAGTAGTTCATCATCCT CTTTGCAAGTCTCGGAAGTCAAGGAGCATCTTTACCAAGCTCTCCAGGGGATTAACAGAGGGGTATTTGGGACCACATCTGGAAAGAAATCTGAGATTCA GGAGCTGGTTGAGCTGCTTGAGTCCCAGAACCCAACTCCAGATCCCACTCTCAGTCTCCACAAGGTGGATGGCTGCTGGAAACTAGTGTACAGCACAATC AGCATACTGGGTGCAAAGAGGACAAAGCTGGGATTGAGAGATTTCATCACCTTAGGGGATCTCTTCCAAATCATTGATGTAGCTGAGAGCAAAGCGGTCA ATGTGATGAAGTTCAACGTCAGAGGACTGAACCTGTTGAATGGGCAGCTTACAATTGTAGCCTCCTTCAAGATTGCTTCCAAATCAAGAGTTGGGATTAA ATACATAGGTTCAAGGATAACACCTGAGCAGCTGATGAATGTGTTCCAGAAGAACTATGATCTTCTGCTCAGCATCTTCAATCCAGAAGGATGGCTTGAG CTCACATATGTTGACGATGAGATGAGGATAGGAAGAGATGAAAAGGGTAATATCTTTGTGTTGGAGAGATCCCATGAACAAATTGACTCTTCCATTGCTC AGAATTGA
AA sequence Show only first row Show all	>Lus10020860 pacid=23177960 polypeptide=Lus10020860 locus=Lus10020860.g ID=Lus10020860.BGIv1.0 annot-version=v1.0 MAFTHSQPWTMNNQQQQGKSGIKVAPQSSSSSSSLQVSEVKEHLYQALQGINRGVFGTTSGKKSEIQELVELLESQNPTPDPTLSLHKVDGCWKLVYSTI SILGAKRTKLGLRDFITLGDLFQIIDVAESKAVNVMKFNVRGLNLLNGQLTIVASFKIASKSRVGIKYIGSRITPEQLMNVFQKNYDLLLSIFNPEGWLE LTYVDDEMRIGRDEKGNIFVLERSHEQIDSSIAQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09820			Plastid-lipid associated prote...		Lus10020860 [exp]	0	1
AT5G56850			unknown protein		Lus10008560 [exp]	1.0	0.9453
AT5G09820			Plastid-lipid associated prote...		Lus10033514 [exp]	3.2	0.9236
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10014022 [exp]	3.5	0.9230
					Lus10030090 [exp]	4.2	0.9376
AT2G32500			Stress responsive alpha-beta b...		Lus10015134 [exp]	5.3	0.9257
AT5G16810			Protein kinase superfamily pro...		Lus10040743 [exp]	13.1	0.9280
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10027278 [exp]	15.2	0.9074
AT3G59780			Rhodanese/Cell cycle control p...		Lus10027050 [exp]	17.0	0.9112
AT5G53850			haloacid dehalogenase-like hyd...		Lus10005542 [exp]	17.5	0.9070
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10019895 [exp]	18.3	0.8841

Compare expression of checked genes

Lus10020860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.