Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63960 1174 / 0 EMB2780 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) AT1G67500 215 / 4e-57 ATREV3 recovery protein 3 (.1.2) AT1G49180 161 / 1e-42 protein kinase family protein (.1.2) AT5G67100 168 / 3e-42 ICU2 INCURVATA2, DNA-directed DNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033513 [exp] 1485 / 0 AT5G63960 1785 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Lus10029911 [exp] 221 / 9e-59 AT1G67500 1431 / 0.0 recovery protein 3 (.1.2) Lus10009366 [exp] 149 / 4e-36 AT5G67100 1807 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1) Lus10019338 [exp] 147 / 2e-35 AT5G67100 1751 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G065800 [exp] 1243 / 0 AT5G63960 1817 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Potri.013G022200 [exp] 225 / 4e-60 AT1G67500 1426 / 0.0 recovery protein 3 (.1.2) Potri.007G045300 [exp] 142 / 5e-34 AT5G67100 1734 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0194 [flax] [poplar] DNA_pol_B-like PF00136 [flax] [poplar] DNA_pol_B DNA polymerase family B CL0219 [flax] [poplar] RNase_H PF03104 [flax] [poplar] DNA_pol_B_exo1 DNA polymerase family B, exonuclease domain
Representative CDS sequence Show only first row Show all	>Lus10020862 pacid=23177948 polypeptide=Lus10020862 locus=Lus10020862.g ID=Lus10020862.BGIv1.0 annot-version=v1.0 ATGAACCGCGCCGGAAATGCTAGGAAGCGCCCGCCGCCGGCGAAGCCTCCGCAACCGTCGCCCGCAGCCAAGGTTCAGGCAAGAGGGCCGGAGGACGATT TCGTCGACGAGGATGTGTTTCTGGACGAAACCCTTATCGCAGAAGACGAAGGGAACATCAACAGTGAGTGGGCTCAGCAGTCTCTCGTCTCTCACCTGGC TAAATGGAAGCGTCCTTCGCTCTCTCACGATTATGTTTCCCAGTCTAAAAGCATAACATTTCAGCAGTTAGAGCTGGATTATGTGGTTGGTGATAGCCGT AATGATCTGTTGGATAATTGGTCCGGACCTGCCCCTATTATTAGAATCTTTGGGGTTACCGCAGAAGGTCATAGTGTGTGCTGCAATGTTCATGGATTTG AGCCTTATTTCTACATTAGTTGCCCTTCTGGAATGGGACCAGATGACATTTCTCGGTTTCATCAGGTTCTTGAGGCAAGAATGAAGGAGATGAACCGGAG TAGTAAAGTGTCGAAACTAATCAGGAGAATCGAACTGGTACATAAAAAGAGCATCATGTACTATCAACAACAGGACTCCAATCCTTTTCTTAAGATTGTT GTGGCATTGCCAGCAATGGTTGCAAGTTGTCGGGGTGAGGAACTTGCACAATACTCATCATTGCTAAGCCATGTCCCAGAAGGAGAGTTCTCAAAAATGG CTCCTTTCCGGATATTGAGTTTTGATATCGAGTGTGCGGGACGTAAAGGTCACTTTCCTGAACCCACTCATGATCCTGTTATTCAGATTGCCAACTTAGT TACTCTGCAAGGGGAGAACCAACCATTTGTGCGTAATATCATGACACTAAAATCATGCTCACCCATCGTTGGTGCAGATGTGATGTCTTTTGATACCGAA AGAGAAGTCCTACTAGCTTGGAGGAGGGCTCAAAGCTTAGGCATATCAGAGTTTCCAATATTAGGACGCATTAGAAACTGCAGGGTTCGGGTCAGAGATG CAACTTTTTCTTCAAGGCAGTATGGAACACGTGAAAGTAAAGAAGTTGCTTTAGAGGGGAGGGTTCAGTTTGATTTGCTCCAGGATGCATACCTCCCGCA GCGACTTCTGGATAAACTGATGTACATATACAACTACGTAGAAATGGCTCGTGTCACTGGCGTACCTATATCTTTTCTTCTCGCGAGGGGGCAGAGTATC AAGGTACTTTCTCAGCTCCTGAGGAAGTCTAAGCAAAAGGGTCTCTTAATTCCAAATGTGAAACAGGCAGGATCTGATCAAGGAACGTATGAAGGTGCAA CTGTTTTGGAGCCTAAAGTGGGATTCTATGAAAAGCCAATTGCAACATTGGATTTTGCTTCTCTATATCCATCAATAATGATGGCATATAACCTGTGCTA CTGCACTCTGGTGACTCCTGAAGATGTTAAAAAACTCAACCTGCCTACAGAGTGTGTCAACAAGACTCCATCTGGTGAAATATTTGTCAAATCCACTTTG CAAAAGGGAATTCTTCCTGAAATTCTTGAAGAACTAATTGCCGCACGCAAAAGAGCAAAAGCGGATTTAAAGGAAGCAAAGGATCCATTTGAGAAGGCAG TTCTGGATGGCCGCCAACTGGCCCTTAAGATAAGCGCAAATTCTGTATATGGCTTTACAGGAGCGACAATTGGCCAATTACCATGTCTGGAGATATCCTC AAGTGTGACGAGCTATGGTCGCGAAATGATTGATCACACAAAAAAACTAGTGGAGGAGAAATTTACTATGCTGGGAGGCTATGAGCATAATGCTGAGGTT ATATACGGGGACACAGATTCTGTTATGGTACAATTTGGTGTGTCCACAGTAGAAGAAGCAATGAAGTTGGGAAGAGAAGCTGCTGAACATATCAGTGGAA CTTTCATCAAACCTATCAAGCTGGAGTTTGAGAAGGTCTATTTTCCATATCTACTGATAAGCAAGAAGAGATATGCTGGCTTATTCTGGACGAGTCCGGC TAATTATGACAAAATGGATGCTAAAGGAATTGAAACAGTGCGAAGAGACAACTGCCTTTTGGTTAAAAACCTGGTAACAGAGTGTCTGCACAAGATACTA ATGGACAGAGATGTTCCTGGTGCTGTTCGATATGTCAAGAATACTATTTCAGATCTTCTCATGAATCGTCTGGATCTGTCACTCCTTGTTATAACTAAGG GCCTGACAAAGACAGGAGATGATTATGAAGTAAAGTCTGCTCATGTTGAGCTTGCAGAACGCATGCGCAAGAGAGATGCCGCCACTGCCCCGAATGTCGG GGACCGAGTCCCTTATGTTATAATCGAATCTGCCAAAGGAGCTAAGCCACTTCTACGGATCTTTGAGCCGATTTTGAAGAATGCAAAAGAAGAACTACTA AGTGGTGATCATACCCGGAACATATCCAAACCCATTCCTTCCAGTGGTGGCATTATGAAATTTGCCAAGAAACAACTCACTTGCATCGGCTGCAAAGCCT TAATTAAGTATGTTCACAACAATCCTCCATTTCGGATACTTGTTCATTTTGCATTGCATTTCACAGTAGTTGCTTTGGATATGTTTAGTTGTATGACCGT TGCTAATCATTATTTCAAAGCAGGGAATCGGAACGAACCATTTGCTCGCACTGCAAAGGAAGAGAACCGGAGCTGTATTGTAAAACTGTTTCTCAAGGTC GGGCCCGGGTTGTGTCATCTTTCTTGCTTGTTAGGCTTTTTTGCGTGCTCTTATGTAGAATGTTGTTTTCCTTGTATCCCTGGGTGGCGTGCAGTGGCTG ATCTAGAGTTGCTTTTCGGGAGATTATGGACACAGTGCCAAGAATGCCAAGGCTCCCTTCATCAAGATGTTCTATGCACCAGGAAGAAGGCGCAGAAAGA CATGGCTGAAGCTAAGAGGCAGCTTGATCGCTGGAGCTTCTGA
AA sequence Show only first row Show all	>Lus10020862 pacid=23177948 polypeptide=Lus10020862 locus=Lus10020862.g ID=Lus10020862.BGIv1.0 annot-version=v1.0 MNRAGNARKRPPPAKPPQPSPAAKVQARGPEDDFVDEDVFLDETLIAEDEGNINSEWAQQSLVSHLAKWKRPSLSHDYVSQSKSITFQQLELDYVVGDSR NDLLDNWSGPAPIIRIFGVTAEGHSVCCNVHGFEPYFYISCPSGMGPDDISRFHQVLEARMKEMNRSSKVSKLIRRIELVHKKSIMYYQQQDSNPFLKIV VALPAMVASCRGEELAQYSSLLSHVPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGENQPFVRNIMTLKSCSPIVGADVMSFDTE REVLLAWRRAQSLGISEFPILGRIRNCRVRVRDATFSSRQYGTRESKEVALEGRVQFDLLQDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLARGQSI KVLSQLLRKSKQKGLLIPNVKQAGSDQGTYEGATVLEPKVGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVKKLNLPTECVNKTPSGEIFVKSTL QKGILPEILEELIAARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGREMIDHTKKLVEEKFTMLGGYEHNAEV IYGDTDSVMVQFGVSTVEEAMKLGREAAEHISGTFIKPIKLEFEKVYFPYLLISKKRYAGLFWTSPANYDKMDAKGIETVRRDNCLLVKNLVTECLHKIL MDRDVPGAVRYVKNTISDLLMNRLDLSLLVITKGLTKTGDDYEVKSAHVELAERMRKRDAATAPNVGDRVPYVIIESAKGAKPLLRIFEPILKNAKEELL SGDHTRNISKPIPSSGGIMKFAKKQLTCIGCKALIKYVHNNPPFRILVHFALHFTVVALDMFSCMTVANHYFKAGNRNEPFARTAKEENRSCIVKLFLKV GPGLCHLSCLLGFFACSYVECCFPCIPGWRAVADLELLFGRLWTQCQECQGSLHQDVLCTRKKAQKDMAEAKRQLDRWSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10020862 [exp]	0	1
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	1.4	0.9605
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	3.0	0.9488
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10006070 [exp]	3.7	0.9492
AT1G77620			P-loop containing nucleoside t...		Lus10035108 [exp]	4.1	0.9317
AT4G31880			unknown protein		Lus10018332 [exp]	4.9	0.9449
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10018975 [exp]	6.9	0.9336
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	8.5	0.9381
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022945 [exp]	11.6	0.9247
AT1G21730			P-loop containing nucleoside t...		Lus10018145 [exp]	11.6	0.9356
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10000854 [exp]	14.4	0.9362

Compare expression of checked genes

Lus10020862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.