Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30920 389 / 7e-136 ATCOQ3, EMB3002 embryo defective 3002, coenzyme Q 3 (.1) AT1G64970 50 / 1e-06 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT1G73600 44 / 0.0002 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G20330 43 / 0.0002 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT3G18000 42 / 0.0004 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G13710 41 / 0.001 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033512 [exp] 595 / 0 AT2G30920 416 / 1e-146 embryo defective 3002, coenzyme Q 3 (.1) Lus10018010 [exp] 45 / 5e-05 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013038 [exp] 44 / 7e-05 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10042006 [exp] 44 / 0.0001 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009537 [exp] 43 / 0.0002 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10029124 [exp] 43 / 0.0002 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10020357 [exp] 42 / 0.0004 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10009056 [exp] 42 / 0.0005 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10023995 [exp] 41 / 0.0009 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G093100 [exp] 406 / 4e-143 AT2G30920 425 / 1e-150 embryo defective 3002, coenzyme Q 3 (.1) Potri.013G077000 [exp] 44 / 9e-05 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10020863 pacid=23177981 polypeptide=Lus10020863 locus=Lus10020863.g ID=Lus10020863.BGIv1.0 annot-version=v1.0 ATGGCGGCAAAGCTTCTGACGAGACTCCGACAACTACACTCCCCGCAACCTCACCGGCGAATCTTCCACGGGCTCCGGCTATTGTCCGGAGCTTCAATTT CTACCTCCGCTCCTCTACCTCCAAATCAAACACCGCCGCCGCTCCCTCCTCCGCGTAGCGATGCAAATAGCACTGCGAACCTCGGGGAGATCCACCACAA GCCGACGACGTCATCTCTGAAGGAATACGAGCTCGCGAAATTCTCCGCAATCGCTGATACCTGGTGGGACGCTGATGGTCCGTTTAAACCTCTTCATGAG ATGAACCCTACCAGACTTGCTTTCATTCGCTCCACTCTCTGCCGGCATTTCAGGAAGAATCCGGAGTTGCCTAAACCATTTGAAGGACTAAAAATCGTTG ATGTTGGTTGTGGCGGTGGGATCCTTTCTGAGCCTTTGGCACGATTGGGAGCAACCGTGATAGGTGTAGATGCGGTGGATAAGAATATCAAGATCGCACG CCTTCACTCTGACTTGGACCCTTCAACTTCTACGATCGAGTATGTTTGCACAACTGCAGAAAAACTGGTTGAAGAAGGAAGGCAATTTGATGCTGTGATG GCACTAGAGGTGATTGAGCATGTAGCTGACCCAGCCGAATTCTGCAAGTCGCTAGCAGCTTTAACTCGTCCAGGTGGAGCCGTTCTCATCTCGACTATAA ACAGATCTATGAGAGCATATGCTGCTGCTATTGTTGCAGCAGAATACATTCTCCATTGGCTTCCGAGGGGCACACACCAGTGGTCGAGCTTCCTCACTCC AGAAGAGCTGGCCATGATCCTTAAACAGGCTTCGATCGATGTGGAAGAAATGGCTGGATTCGCGTTGAATCCTTTAACCGGGAGGTGGATTATATGCGAC GATGTCAGCGTAAATTTCATCACTTTCGCCACCAAAAAGGCGGAACATGAAGGGCGAGAAGAACTCGTTGCATCGCAACCATCCGTTTAA
AA sequence Show only first row Show all	>Lus10020863 pacid=23177981 polypeptide=Lus10020863 locus=Lus10020863.g ID=Lus10020863.BGIv1.0 annot-version=v1.0 MAAKLLTRLRQLHSPQPHRRIFHGLRLLSGASISTSAPLPPNQTPPPLPPPRSDANSTANLGEIHHKPTTSSLKEYELAKFSAIADTWWDADGPFKPLHE MNPTRLAFIRSTLCRHFRKNPELPKPFEGLKIVDVGCGGGILSEPLARLGATVIGVDAVDKNIKIARLHSDLDPSTSTIEYVCTTAEKLVEEGRQFDAVM ALEVIEHVADPAEFCKSLAALTRPGGAVLISTINRSMRAYAAAIVAAEYILHWLPRGTHQWSSFLTPEELAMILKQASIDVEEMAGFALNPLTGRWIICD DVSVNFITFATKKAEHEGREELVASQPSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30920		ATCOQ3, EMB3002	embryo defective 3002, coenzym...		Lus10020863 [exp]	0	1
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	4.0	0.8145
AT4G16490			ARM repeat superfamily protein...		Lus10038811 [exp]	12.2	0.7837
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004659 [exp]	15.5	0.7306
AT5G08060			unknown protein		Lus10040513 [exp]	15.8	0.8112
AT5G05340			Peroxidase superfamily protein...		Lus10029065 [exp]	18.8	0.7676
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Lus10018200 [exp]	19.1	0.7296
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Lus10015954 [exp]	21.9	0.7609
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031655 [exp]	23.5	0.7095
AT3G18410			Complex I subunit NDUFS6 (.1.2...		Lus10009665 [exp]	26.7	0.7765
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019441 [exp]	30.3	0.7722

Compare expression of checked genes

Lus10020863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.