Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 129 / 2e-34 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 49 / 1e-06 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16740 43 / 7e-05 ATTPS03 terpene synthase 03 (.1.2) AT2G24210 43 / 8e-05 AtTPS10 terpene synthase 10 (.1) AT3G25810 43 / 0.0001 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16730 43 / 0.0001 AtTPS02 terpene synthase 02 (.1) AT1G48820 43 / 0.0001 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G48110 42 / 0.0002 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G15870 42 / 0.0002 ATTS1 terpene synthase 1 (.1) AT3G29110 41 / 0.0004 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029033 [exp] 296 / 1e-95 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014673 [exp] 218 / 2e-66 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 205 / 2e-61 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006923 [exp] 182 / 9e-54 AT1G79460 538 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 157 / 3e-44 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004443 [exp] 144 / 2e-39 AT1G79460 564 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 140 / 6e-38 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034229 [exp] 132 / 2e-35 AT1G79460 583 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034232 [exp] 125 / 1e-32 AT1G79460 569 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082400 [exp] 157 / 4e-44 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082700 [exp] 156 / 6e-44 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.011G142800 [exp] 63 / 2e-11 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 56 / 4e-09 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 56 / 6e-09 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.017G041700 [exp] 56 / 6e-09 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G119700 [exp] 55 / 9e-09 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.007G118600 [exp] 48 / 2e-06 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.004G037900 [exp] 45 / 3e-05 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.019G022338 [exp] 43 / 0.0001 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10020865 pacid=23178004 polypeptide=Lus10020865 locus=Lus10020865.g ID=Lus10020865.BGIv1.0 annot-version=v1.0 ATGAGACTGGCCAAGGGGAGGATGGGATATTGTATATTCACCGTGGCAGCGACTTGCTTCGAGCCTAAGCACTCCCACGCCCGCATCTCCTGGGCAAAAC ACAGTCTTCTTACTGCTCTCATCGATGAAATTTATGACATGTATGGAACTCCAGAGGAACAGCTTAACCTTGTTCATCTTCAAGAGAGATGGGATATTGC TAGCCCTAAGGTAGATTTCTGTTCGGAGCGAGTAGAAAGCTTATATTGGGCACTTCACAACGCCATATGCGAGACTGCCGCAAAGGTATCATTTGCTTTA GGACCAATTGTTCTGCCAACCCTTTACTTGCTAGGACCTAAGCTCTCCGATGAAGTTGCCAAGGGGCCAGAAATCCGAAACATGTTCAACGTTGTGACAG AAGACTGTGATGAAGAAATCAAAGAGCTAGCAGAAGATCTGAGGAAACAACTGTCGAGATTAGAGTTGGATGAACAGAGTAGTAGCAGTATAGTTCCAAA GGAATGCAGGGTATTGTTTCGCAAAATGAACGATGCGCTGCACTGTTCTTACAAGAAAGAAGACGGGTTCGCGTCCCTTCAATTGGGCCGAGACCTTGAG TTTTTGATTGAGAAACCCATCCCACTTAGCGATAGAGTTTTGAAGGATGAGTATGGATATGTTAAATGA
AA sequence Show only first row Show all	>Lus10020865 pacid=23178004 polypeptide=Lus10020865 locus=Lus10020865.g ID=Lus10020865.BGIv1.0 annot-version=v1.0 MRLAKGRMGYCIFTVAATCFEPKHSHARISWAKHSLLTALIDEIYDMYGTPEEQLNLVHLQERWDIASPKVDFCSERVESLYWALHNAICETAAKVSFAL GPIVLPTLYLLGPKLSDEVAKGPEIRNMFNVVTEDCDEEIKELAEDLRKQLSRLELDEQSSSSIVPKECRVLFRKMNDALHCSYKKEDGFASLQLGRDLE FLIEKPIPLSDRVLKDEYGYVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10020865 [exp]	0	1
					Lus10005830 [exp]	4.7	0.9879
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10041782 [exp]	5.8	0.9622
					Lus10009618 [exp]	6.6	0.9879
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	8.1	0.9879
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	9.4	0.9879
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	10.5	0.9879
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	11.5	0.9879
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	12.4	0.9879
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	13.3	0.9877
					Lus10011249 [exp]	13.5	0.8862

Compare expression of checked genes

Lus10020865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.