Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09840 529 / 3e-173 Putative endonuclease or glycosyl hydrolase (.1) AT5G64710 470 / 1e-151 Putative endonuclease or glycosyl hydrolase (.1.2) AT3G62210 144 / 3e-38 EDA32 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) AT3G62200 148 / 9e-37 Putative endonuclease or glycosyl hydrolase (.1) AT5G61190 146 / 1e-35 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1) AT5G61180 139 / 1e-35 Putative endonuclease or glycosyl hydrolase (.1) AT3G60940 115 / 2e-28 Putative endonuclease or glycosyl hydrolase (.1) AT3G61028 104 / 8e-25 Putative endonuclease or glycosyl hydrolase (.1.2) AT2G15560 103 / 1e-22 Putative endonuclease or glycosyl hydrolase (.1) AT3G62050 71 / 3e-14 Putative endonuclease or glycosyl hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033511 [exp] 1503 / 0 AT5G09840 561 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10009982 [exp] 143 / 5e-35 AT3G62200 429 / 9e-142 Putative endonuclease or glycosyl hydrolase (.1) Lus10019845 [exp] 108 / 2e-24 AT2G15560 488 / 2e-169 Putative endonuclease or glycosyl hydrolase (.1) Lus10038949 [exp] 63 / 1e-10 AT3G62200 89 / 2e-20 Putative endonuclease or glycosyl hydrolase (.1) Lus10038041 [exp] 0 / 1 AT3G62200 179 / 3e-49 Putative endonuclease or glycosyl hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307700 [exp] 600 / 0 AT5G09840 588 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.019G004000 [exp] 577 / 0 AT5G09840 406 / 2e-126 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003301 [exp] 160 / 6e-42 AT3G62200 276 / 2e-85 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003100 [exp] 153 / 8e-40 AT3G62200 280 / 1e-87 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003000 [exp] 153 / 2e-38 AT3G62210 250 / 9e-78 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) Potri.005G003800 [exp] 150 / 1e-37 AT3G62200 465 / 2e-156 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003200 [exp] 148 / 1e-36 AT3G62200 258 / 8e-76 Putative endonuclease or glycosyl hydrolase (.1) Potri.004G140400 [exp] 112 / 1e-25 AT2G15560 545 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.009G100600 [exp] 108 / 2e-24 AT2G15560 528 / 0.0 Putative endonuclease or glycosyl hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF01936 [flax] [poplar] NYN NYN domain
Representative CDS sequence Show only first row Show all	>Lus10020866 pacid=23178022 polypeptide=Lus10020866 locus=Lus10020866.g ID=Lus10020866.BGIv1.0 annot-version=v1.0 ATGGCGGTGGAGCTTACTCACCTGCATATACCTTCTCCCACGCCATTAATCCTGCAAAAAACCAGCACAACCACCCTAAACATCAAAACCCCCCGAAAAT CAGCAGCCATGATCGCGAAGAAGGCTTTCTCTTCATCGAAATCCCTTCCATCTCAGCCGTCGATCCTCATTTCTTACTTCTCCACTTCATCCGCTCAGTC TCATCAGCATTTCAAGTCTCGGAGGCATCAGCAGGAGGAGGATTCCAGGAACGTGAGGATATCGGTTTGGTGGGATTTCGAGAACTGCCGCCCTCCGGCG GGTGCCAATGCGTTCAGAGTTGCGCAGATGATCACCGCCGCCGTTCGTGCCAACGAGATGAAGGGCCCCATTCAGATCACGGCCTTCGGCGACGTGTTCC AGCTTTCCAGGTCCAACCAGGAAGCCCTTTCTTCTTCCGGAATCAACATGACTCATGTTCCCAATGGAGGAAAGAACAGTGCAGACAGGTCTCTGCTAGT GGATCTGATGTATTGGGTGTCCCAGAATCCACCACCTGCACATCTGTTTCTGATTTCTGGTGATAGGGACTTCGCTAGTACGTTACACCGGTTAAGGATG AACAACTACAACATATTGCTTGCGTCGGTAGAAACCGCTCCTAGCTTTCTCTGCAGTGCTGCCAGTATCACGTGGCATTGGAATGAATTAGTGAAGGGGG AGAACTTAACCGGAAAGTATTTCAATCAACCTCCTGATGGTCCTTATGGTTCCTGGTATGGCCATTACAAGTTACCCTTGGAAGACCCCTTTACCGTTGC AGCTAAACCTTCCCCACTACCACCGAGCCCCAAGGTCGAGGAGAGTATTGATTCGGAGACCAAGATGCGCCCTATACCGCAAGGATTGAAAAAGCAGATC CGTCAAGTTTTGAGTTTGTACCCTGAAGGGATGTTGATATCGGAGCTTCATTTAGTGTTGCAGAGAAGGAACGTGGATATTGATGAGAAATTCTATGGGC ATATGAATTTCTCATCCTTTCTCTTGGCCATGCCACAAGATTTCAAGCTGCAGAAGCTTGGAGATGGTAAGTTCCTTGTACAGCTAGTCGATGCTAAAGA TCTTGAATCGCCCGATCCTCTCTTTTCAACGGCCATTGATATACATCATAATGTGAATTCACTTCCTTCCAACTCTTCCAAGCTGGAGGATACCAATAGT AAAGCTGAGAATGTGGCATCCTTGGAGAGAAAAATCAGCGTGCCTGAAAAAGAAGTGCAAGACCCTGCAAGAGCTGTCAACCGGAAGGAATCCACTTACC CTGTTGATGAAAAAGTCATACGAAAGTCTAATGCTTTGGAGACGAATAAGCAGACGTCTCAAGTGAGGAAGGAAGAACATGTTAGTGAACATGTTCCTGA TAAGAAGGAATCCATCCGTCCTGTTAGTGAACAGGTATCAAAGAAGTTGTCTTCTGATGGTGGGGTTTTCAATATTATCCGGAGAATTTGGTCTGGTAGC TCCAAGAAGGAAACTGAAGACTCTCCAGAAATTCCTAATAACAAGCTTGGAGGAGAAGCTGTTAATAATAAGAAGCTTGCTTCATCCTGCTATGAACCTA ATGTTTATTCAAGGCTCGGGAGTAAAAGCGACAGAATATCCGAAGCATCCAGTGAAAGCCTGACAGAGAACAGTGCCAGCAAAGATTCGACCCAAAATCC AGGTTTACTTAGTCGGTTTAAGAATTGGTGGAAATCCAAGGGAACTAGTGTCGAATCCATATACAAGCAACCCAACGAAATCCTCGATCCGAGAAATGTT AGTGCTCTAAATCATGAGCTCTATTCTAAGGACTCTTTCTGGAGCGAGATGGAGCCCTTTATCAGGACTCAGAAGGGATCACTCACTATAACAAAATCGA AGTCAAGGGAAGAAATGGCAACAGACCTGCAAAAGGAGGGGCCTTTAGTGCTTAAATCCCTCAAGGAAAGTGACCTAATTCTGTTAGTAGATATCCTGAT ATCAGAGAAGAAATGGGTGGATGAATGTCCTTCTGAAGCTTCCCCTTTTAAGGTCACTCTCTCTTTTGATAATGCTGCCCCGAATGATGATCCTCGAGGT CGTCCAAATGGTCTGAGATCGTCTTTCCGGAATGAAGCACTGCTACCTCCCAGTGATCTGAAATCTTTCGAGCGGTCAATAGACGATATATTAAAGGACT GTAGGAATCTCGCGCAAGAGATAGTGAAGGAATTCCCATATGGATATAGCATAAGGTCATTACGGAAGGAATTCATCCACAGGTATGGGTATTATTTTGA TGTCCAGAAGCTTGGCTACCAAAAGTTGTCATCTTTGTTAGAAATAATGCCAGGTGTGAGAGTTGAGTGTACCTATATTTACCCTATGGAATCACTTAAG GTTCCGGAGAAGGAGAATGGATCAGATTCCGGATGGGATGAACTAGGTCCTCTTGATGGTGGAAGCACAGAATCAGAACAACCTAGTCCTTCGTACGAGC CTTGCCTTTCGGAGTCTTCATCGTCCGACTCTGAGGACGGGAGGCTGGCGAGTAGTACTCAGCCAGAATCCCGGGTGAAGAAGTGCAATGCAAGTGAGAA TAAGAGTTCGTTACTAGAGATTCTTGATGTATGGTATGACAGTAAGAATGGAGAAACCGGAAACAAGAAAGTCGACGAGGATGATGCTGATGCAGAGGAG GAGAAGAAGGTTGTTGACTCTCCGAGCAGCATTCGAGGTAGTATTAGTTGTGGTAGAAAGGGTGAGAGTCAAATGGGTTATGGTAATCCTGGAGGAATGC AGAGGATTGTGGAGTCTTATTCGTTTGTTGAGGATCCAGTTGTGGAGGAGCAGCATAAACTGATAGATGGCATCTTAACTAGCTTGAAGAAAACAAGTGA GACCAGGATGCATAGCTGA
AA sequence Show only first row Show all	>Lus10020866 pacid=23178022 polypeptide=Lus10020866 locus=Lus10020866.g ID=Lus10020866.BGIv1.0 annot-version=v1.0 MAVELTHLHIPSPTPLILQKTSTTTLNIKTPRKSAAMIAKKAFSSSKSLPSQPSILISYFSTSSAQSHQHFKSRRHQQEEDSRNVRISVWWDFENCRPPA GANAFRVAQMITAAVRANEMKGPIQITAFGDVFQLSRSNQEALSSSGINMTHVPNGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASTLHRLRM NNYNILLASVETAPSFLCSAASITWHWNELVKGENLTGKYFNQPPDGPYGSWYGHYKLPLEDPFTVAAKPSPLPPSPKVEESIDSETKMRPIPQGLKKQI RQVLSLYPEGMLISELHLVLQRRNVDIDEKFYGHMNFSSFLLAMPQDFKLQKLGDGKFLVQLVDAKDLESPDPLFSTAIDIHHNVNSLPSNSSKLEDTNS KAENVASLERKISVPEKEVQDPARAVNRKESTYPVDEKVIRKSNALETNKQTSQVRKEEHVSEHVPDKKESIRPVSEQVSKKLSSDGGVFNIIRRIWSGS SKKETEDSPEIPNNKLGGEAVNNKKLASSCYEPNVYSRLGSKSDRISEASSESLTENSASKDSTQNPGLLSRFKNWWKSKGTSVESIYKQPNEILDPRNV SALNHELYSKDSFWSEMEPFIRTQKGSLTITKSKSREEMATDLQKEGPLVLKSLKESDLILLVDILISEKKWVDECPSEASPFKVTLSFDNAAPNDDPRG RPNGLRSSFRNEALLPPSDLKSFERSIDDILKDCRNLAQEIVKEFPYGYSIRSLRKEFIHRYGYYFDVQKLGYQKLSSLLEIMPGVRVECTYIYPMESLK VPEKENGSDSGWDELGPLDGGSTESEQPSPSYEPCLSESSSSDSEDGRLASSTQPESRVKKCNASENKSSLLEILDVWYDSKNGETGNKKVDEDDADAEE EKKVVDSPSSIRGSISCGRKGESQMGYGNPGGMQRIVESYSFVEDPVVEEQHKLIDGILTSLKKTSETRMHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09840			Putative endonuclease or glyco...		Lus10020866 [exp]	0	1
AT2G41620			Nucleoporin interacting compon...		Lus10029548 [exp]	1.0	0.9636
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10024199 [exp]	2.0	0.9520
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001170 [exp]	3.5	0.9610
AT2G22400			S-adenosyl-L-methionine-depend...		Lus10020217 [exp]	3.9	0.9562
AT4G28200			unknown protein		Lus10003351 [exp]	5.7	0.9381
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	5.7	0.9412
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	6.3	0.9516
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10002990 [exp]	6.9	0.9376
AT5G64420			DNA polymerase V family (.1)		Lus10025659 [exp]	7.1	0.9237
AT3G55160			unknown protein		Lus10015366 [exp]	7.7	0.9509

Compare expression of checked genes

Lus10020866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.