Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64700 127 / 5e-36 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G43650 94 / 3e-23 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08290 92 / 2e-22 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G21890 83 / 4e-19 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 81 / 2e-18 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G68170 78 / 1e-17 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 74 / 9e-16 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 72 / 2e-15 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 69 / 3e-14 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 66 / 4e-13 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033510 [exp] 200 / 3e-64 AT5G64700 322 / 4e-109 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10018890 [exp] 93 / 2e-23 AT1G43650 237 / 2e-77 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10020987 [exp] 87 / 2e-20 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028586 [exp] 86 / 6e-20 AT1G43650 314 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10008706 [exp] 85 / 9e-20 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 82 / 1e-18 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 81 / 2e-18 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 81 / 3e-18 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 81 / 4e-18 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004100 [exp] 144 / 4e-42 AT5G64700 339 / 3e-115 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307800 [exp] 119 / 1e-32 AT5G64700 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G192100 [exp] 109 / 4e-29 AT1G43650 305 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G068300 [exp] 107 / 2e-28 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.011G148600 [exp] 100 / 1e-25 AT5G64700 219 / 1e-68 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 84 / 2e-19 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 83 / 3e-19 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 82 / 6e-19 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 82 / 1e-18 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 81 / 2e-18 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020867 pacid=23177929 polypeptide=Lus10020867 locus=Lus10020867.g ID=Lus10020867.BGIv1.0 annot-version=v1.0 ATGTTCACAGCGCTACAATGCTTTCTAAGCGCAATTCAGTCCTTTGTGGTTGCTATTGCTGTTGAGAGGAATCCTGACGAGTGGAAGCTAGGCTGGAACA CCCGGCTCGTCGCAGTGGCTTACTGTGGAATAGTTGTGACAGGAGTAACGTATTACTTGCATGCTTGGGTGCTGGAAAAGAAAGGGCCAGTCTTCTTGGC ATGTCCACTCCTCTGGCTCTCATCTTCACTATGGTTTGTTCCGCACTTCTCTGCGACTTCATCACCCTCGGAAGGTAAAACCGACTCGATTCATTTCAAT TTCTGCCCTATTCAGTCCGATTCTATTCTGGGTGGAGTGATGTTGGTTGGAGGGCTTTACAGTGTGCTGTGGGCAAAAGGCAGAGAAGAGAAGATGATCC ATGATGATGATGATGGTGAGATCCAGAAGATCCCCAACATGGCTGGAGAATCAGAGCTCAAAGAAATTGTCACAACTGATTAA
AA sequence Show only first row Show all	>Lus10020867 pacid=23177929 polypeptide=Lus10020867 locus=Lus10020867.g ID=Lus10020867.BGIv1.0 annot-version=v1.0 MFTALQCFLSAIQSFVVAIAVERNPDEWKLGWNTRLVAVAYCGIVVTGVTYYLHAWVLEKKGPVFLACPLLWLSSSLWFVPHFSATSSPSEGKTDSIHFN FCPIQSDSILGGVMLVGGLYSVLWAKGREEKMIHDDDDGEIQKIPNMAGESELKEIVTTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	0	1
					Lus10026869 [exp]	1.0	0.8759
					Lus10031737 [exp]	3.0	0.8142
					Lus10008920 [exp]	4.0	0.8698
AT3G01490			Protein kinase superfamily pro...		Lus10030868 [exp]	4.8	0.7011
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10010501 [exp]	5.5	0.7921
					Lus10010697 [exp]	8.2	0.7980
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021184 [exp]	8.5	0.7612
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	9.2	0.7980
AT5G20610			unknown protein		Lus10025003 [exp]	10.1	0.7980
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10042522 [exp]	10.6	0.7691

Compare expression of checked genes

Lus10020867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.