Plant FIBer expression Database

Lus10020868 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033509
[exp]
75 / 2e-15 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10020868 pacid=23177906 polypeptide=Lus10020868 locus=Lus10020868.g ID=Lus10020868.BGIv1.0 annot-version=v1.0
ATGAGGCCGCCGCCAAGCGTCGCTCTCTCAGCAATCTGTTCAAAGAGGTTGGAACTCGGGTGCTCATTCAGCTGTGAAGGAAAGGAGAGCGTTGTAGAAG
AAGAGAAGGAAAAGCCAGTGGCAGCAGAAGCAGCGGATGTGAAAACAGAGGCGGCGGAAGAGAAAACAACACCACCGGCAGCAGCAGCAGAAGCAGAGGA
TGTAAAAACAGGGGCGGAGGAGAAAATAACACCACCACCGGAAGCAGCAGAGACGAAAGAAGCCGTAAAAGCAGAGGTGGAAGATAACAAGGAGGAGTCA
CAGACAGAGGTAGAAGCAGAGCCCAAAGATATTAACGTCGTTGACGGCAAAGAAGAAGAAGAAGTTTCAGTAGTGGAGAAAATAACACCACCACCGCCAG
CAAAGACGGAGGAGGCAGTAAAAGCAGAGGCTGAAGATAATAAAAAGGAGTCACAGACAGAGGGAGAAGCAGAGCCCAAAGAGATTACCGTCGTCGTCAA
AGTTGACGGCGAAGAGGAAGTTAAATTACAAAAAGAAGTTTCAGTAGTGGCGGAAACAGAGTTGCCAGCTGTTACACCATTGCCGGAGAAGGAGGAGGCA
GCGATTATTAGTACAGTTGATGTTGGTGAGAAGCCAGTTGCTGCGGCTGCGGAGGAGGTGGAAGCGCCGCCGGCGGAAGTGGTTAAAGAGACTGTTTGTG
TAAGTTGA
AA sequence
>Lus10020868 pacid=23177906 polypeptide=Lus10020868 locus=Lus10020868.g ID=Lus10020868.BGIv1.0 annot-version=v1.0
MRPPPSVALSAICSKRLELGCSFSCEGKESVVEEEKEKPVAAEAADVKTEAAEEKTTPPAAAAEAEDVKTGAEEKITPPPEAAETKEAVKAEVEDNKEES
QTEVEAEPKDINVVDGKEEEEVSVVEKITPPPPAKTEEAVKAEAEDNKKESQTEGEAEPKEITVVVKVDGEEEVKLQKEVSVVAETELPAVTPLPEKEEA
AIISTVDVGEKPVAAAAEEVEAPPAEVVKETVCVS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10020868
[exp]
0 1
AT1G52340 SIS4, SDR1, ISI... SHORT-CHAIN DEHYDROGENASE REDU... Lus10016354
[exp]
2.2 0.8059
AT3G10520 ATGLB2, ARATHGL... NON-SYMBIOTIC HAEMOGLOBIN 2, A... Lus10037926
[exp]
3.5 0.7633
AT3G12685 Acid phosphatase/vanadium-depe... Lus10001841
[exp]
7.3 0.7520
AT5G66580 unknown protein Lus10019659
[exp]
12.0 0.7378
AT2G02070 C2H2ZnF ATIDD5 indeterminate(ID)-domain 5 (.1... Lus10031929
[exp]
14.5 0.7044
AT2G37550 ASP1, AGD7 yeast pde1 suppressor 1, ARF-G... Lus10003978
[exp]
25.0 0.7478
AT3G60480 unknown protein Lus10000560
[exp]
28.5 0.7407
AT1G08590 Leucine-rich receptor-like pro... Lus10027951
[exp]
29.2 0.7167
AT1G20870 HSP20-like chaperones superfam... Lus10013203
[exp]
29.3 0.7581
AT4G27610 unknown protein Lus10034127
[exp]
34.7 0.6016

Lus10020868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.