Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24090 297 / 7e-99 RNase H family protein (.1) AT5G51080 266 / 2e-87 RNase H family protein (.1.2.3) AT3G01410 259 / 5e-85 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT5G42905 50 / 5e-07 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27870 49 / 1e-06 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G04625 48 / 3e-06 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27220 44 / 6e-05 paired amphipathic helix repeat-containing protein (.1) AT2G13980 43 / 0.0001 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G25270 43 / 0.0002 Ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033508 [exp] 706 / 0 AT1G24090 283 / 3e-93 RNase H family protein (.1) Lus10014521 [exp] 229 / 3e-73 AT3G01410 245 / 2e-80 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10032166 [exp] 192 / 6e-59 AT3G01410 214 / 2e-68 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10027418 [exp] 39 / 0.0007 ND 37 / 0.001
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00075 [flax] [poplar] RNase_H RNase H
Representative CDS sequence Show only first row Show all	>Lus10020869 pacid=23177941 polypeptide=Lus10020869 locus=Lus10020869.g ID=Lus10020869.BGIv1.0 annot-version=v1.0 ATGAACTGCTTGTCTAGGTTGTCTGCATACTCCGCAGCTATCATTGGAGGGAAGAGCCATCTCATTGTGAGGCAATCCTGGAACCAGTGCTCTAATCTTG TTTGGAATCAGCGCAATTCTTTCAGAAGTGTAAACAAGGAGTTTAGCTTTCCCACAGTTGCTACCCGGTGTTACTCAACCCAAAAGGCTAAATCAACAAA AGTTCTGCAAAAAGCAAACTCAGATCAGAACGAAACTGATATGGGTAGAGATTCTTTCTTCGTGGTGCGGAAAGGGGATGTTGTTGGTGTATACAAGACT TTTAATGAGTGCGAGTCGCAAGTCGGATCCTCGATATCTGACCCTCCGGCAAGCATTTTCAAAGGGCATGCTTTAACTGATGAAACCAAAGAGTACCTTG CATCTTGTGGGCTTCAGAATGCTTTATATACTGTCAGAGCTCAAGACTTGAAGGCAGATCTATTCGGCACACTTGTGGCTTGTCCTTTGCCACAACCTGG TTTCTCCACGGATCAACCAGATGCAACATCTGGTAAGAAGAGAACGATAGATACGATGATATTACAAGCAGCGGAAGCATGTGCAACTTCATCCGGTCTA GCTGATCCCTCAGAAAATCTTGCCAGATCGGATTACCAAGTCGCTACTCAACAATATTCTTATGATCCGGAATTTTGTACTCTTGAATTTGATGGTGCTT CAAGAGGAAACCCTGGACCAGCAGGTGCTGGAGCTGTTTTGCGGACAAGTGATGGAACTTTGATTTGCAAGTTGCAAGAAGGATTAGGCCGCAAGACTAA CAACGTTGCTGAGTATAAAGCTGTGCTTCTTGGGCTGAGATATGCTCTGCAAAGGGGATATAGAAAAATACGCATACAAGGTGACTCCAAGCTCGTGTGT TCACAGGTTGATGGTACCTGGAAAGTCAAACACCAAGGCATGGCCGAGCTATGCGATCAGGTCAAAGAGCTAAAGTGCAGATTCGTTAACTTTGAGATTA AGCACGTTCTAAGAGAATTCAATTCTGAAGCTGATGAGCAGGCAAACCTTGCCGTCGAACTTCAAGAAGGCGCAGTACAAGAGGTTTATGAATAG
AA sequence Show only first row Show all	>Lus10020869 pacid=23177941 polypeptide=Lus10020869 locus=Lus10020869.g ID=Lus10020869.BGIv1.0 annot-version=v1.0 MNCLSRLSAYSAAIIGGKSHLIVRQSWNQCSNLVWNQRNSFRSVNKEFSFPTVATRCYSTQKAKSTKVLQKANSDQNETDMGRDSFFVVRKGDVVGVYKT FNECESQVGSSISDPPASIFKGHALTDETKEYLASCGLQNALYTVRAQDLKADLFGTLVACPLPQPGFSTDQPDATSGKKRTIDTMILQAAEACATSSGL ADPSENLARSDYQVATQQYSYDPEFCTLEFDGASRGNPGPAGAGAVLRTSDGTLICKLQEGLGRKTNNVAEYKAVLLGLRYALQRGYRKIRIQGDSKLVC SQVDGTWKVKHQGMAELCDQVKELKCRFVNFEIKHVLREFNSEADEQANLAVELQEGAVQEVYE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24090			RNase H family protein (.1)		Lus10020869 [exp]	0	1
AT2G28600			P-loop containing nucleoside t...		Lus10034162 [exp]	1.4	0.9335
AT4G38890			FMN-linked oxidoreductases sup...		Lus10035460 [exp]	2.0	0.9355
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021017 [exp]	3.5	0.9254
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	4.6	0.9136
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	6.9	0.9315
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10036490 [exp]	7.4	0.9163
AT1G42440			unknown protein		Lus10030752 [exp]	8.5	0.9115
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10022181 [exp]	9.5	0.9053
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040048 [exp]	9.9	0.9109
AT5G52820			WD-40 repeat family protein / ...		Lus10029493 [exp]	13.0	0.8856

Compare expression of checked genes

Lus10020869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.