Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09225 74 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033507 [exp] 87 / 6e-24 AT5G09225 75 / 4e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G036400 [exp] 76 / 2e-20 AT5G09225 72 / 6e-19 unknown protein Potri.006G039100 [exp] 76 / 3e-20 AT5G09225 66 / 3e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020870 pacid=23178016 polypeptide=Lus10020870 locus=Lus10020870.g ID=Lus10020870.BGIv1.0 annot-version=v1.0 ATGCCACACCGGACTCGGCCTATGGCAGCATTGTTGGTGTTCACTGGGCTCAATGTAGTCTTGGTTCAAACCATTACTCCTGTCTATGATTTTGTGTGTT TCCTTCCTTATTGGGAAAGACGGGTATGCAATCTTCTACAAACTGTATTAGAGCCTAATGTTCCTGTGGAGACTGTGGCCTATTTGACAGCTGCATAA
AA sequence Show only first row Show all	>Lus10020870 pacid=23178016 polypeptide=Lus10020870 locus=Lus10020870.g ID=Lus10020870.BGIv1.0 annot-version=v1.0 MPHRTRPMAALLVFTGLNVVLVQTITPVYDFVCFLPYWERRVCNLLQTVLEPNVPVETVAYLTAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09225			unknown protein		Lus10020870 [exp]	0	1
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10005043 [exp]	2.0	0.8436
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10005077 [exp]	3.6	0.8587
AT3G07525		ATG10, ATATG10	autophagy 10, autophagocytosis...		Lus10008745 [exp]	6.5	0.7785
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	8.9	0.8316
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Lus10005796 [exp]	9.8	0.7911
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10027674 [exp]	9.9	0.8175
AT5G63060			Sec14p-like phosphatidylinosit...		Lus10039952 [exp]	10.6	0.7967
AT1G22140			unknown protein		Lus10028077 [exp]	10.7	0.7326
AT1G22140			unknown protein		Lus10025627 [exp]	11.5	0.8324
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10014468 [exp]	11.7	0.8177

Compare expression of checked genes

Lus10020870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.