Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18465 97 / 5e-24 Chaperone DnaJ-domain superfamily protein (.1) AT3G58020 81 / 6e-18 Chaperone DnaJ-domain superfamily protein (.1) AT2G42080 79 / 4e-17 Chaperone DnaJ-domain superfamily protein (.1) AT5G16650 40 / 0.0003 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033506 [exp] 410 / 1e-146 AT2G18465 103 / 3e-26 Chaperone DnaJ-domain superfamily protein (.1) Lus10016258 [exp] 92 / 7e-22 AT2G42080 213 / 5e-69 Chaperone DnaJ-domain superfamily protein (.1) Lus10029287 [exp] 90 / 4e-21 AT2G42080 206 / 5e-66 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G010000 [exp] 206 / 3e-66 AT2G18465 150 / 4e-44 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G308900 [exp] 177 / 1e-54 AT2G18465 149 / 2e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G078200 [exp] 42 / 6e-05 AT5G16650 198 / 6e-67 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10020871 pacid=23177949 polypeptide=Lus10020871 locus=Lus10020871.g ID=Lus10020871.BGIv1.0 annot-version=v1.0 ATGCAAGTACCCAGATGGCGAAACGTGTTAATCCTGAGGAACAACTTGATTCCAGCTCTTTCTCAATCGAAGAAGACCATCATCGCCTCGATTCATTCGA CCCCGGTTTTCTGCGATAGATGGAACAACAACAAGGGGAAATCTAATCATGTGAGATTTGCAGTGCGCCAAAAACGTGCTGACACCAAGAAGGCTTTGAA ACATCTTCTCTTCAATAGTAAATCCTCCGGACCGTCGCAGGTTGAACGACTATGGAACTTTGGTGCAGAAGACCGAACCACTGTTGACAGGAAAAGGCAT GGGAAATCTCCTGGTCAGAATGCTAACTGGAGAGGTCATAGTGCCAAAATAAAGCGCAAGTTTCGAAGAGACAGCTGCGACGAGGACTCAGACGATCCAG AGTCTGTATTCCAGGCGAAATTTGGAAACAGATGGTACACTTGGTCCTTCGACGGGTCTTCTGGCTCCCGACGGTCCAAAAGGACAGAGTCTCCACATTG GACATGGAGAAACCCTAGGGAAGAATTTGACCATCGAGGCAAACCCGAATCTGACGAAGAAGAGCCACCTGTGGTCGTTGGATCATGTTCGGACAGACGA ACCCTCGGGTTGCCACTTTCTGGACCTCTGCAGATTGAAGAAGTGAAAACTGCGTTTCGAATTTCGGCATTGAAATGGCATCCGGATAGGCACGAAGGGG ATTCCCAGGCCATGGCTGCAGAGAAGTTTAAACTGTGTGTTAGTGCTTACAAATCTCTCTGTTCAGTTGTGTCGTGA
AA sequence Show only first row Show all	>Lus10020871 pacid=23177949 polypeptide=Lus10020871 locus=Lus10020871.g ID=Lus10020871.BGIv1.0 annot-version=v1.0 MQVPRWRNVLILRNNLIPALSQSKKTIIASIHSTPVFCDRWNNNKGKSNHVRFAVRQKRADTKKALKHLLFNSKSSGPSQVERLWNFGAEDRTTVDRKRH GKSPGQNANWRGHSAKIKRKFRRDSCDEDSDDPESVFQAKFGNRWYTWSFDGSSGSRRSKRTESPHWTWRNPREEFDHRGKPESDEEEPPVVVGSCSDRR TLGLPLSGPLQIEEVKTAFRISALKWHPDRHEGDSQAMAAEKFKLCVSAYKSLCSVVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18465			Chaperone DnaJ-domain superfam...		Lus10020871 [exp]	0	1
AT1G22140			unknown protein		Lus10025627 [exp]	5.3	0.8441
AT5G03430			phosphoadenosine phosphosulfat...		Lus10026539 [exp]	13.4	0.7989
AT1G67620			Lojap-related protein (.1)		Lus10036979 [exp]	17.3	0.7776
AT5G49540			Rab5-interacting family protei...		Lus10029365 [exp]	28.2	0.7816
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	29.3	0.7931
AT5G30490			unknown protein		Lus10037824 [exp]	32.1	0.7849
AT5G22720			F-box/RNI-like superfamily pro...		Lus10024696 [exp]	33.2	0.7749
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10042022 [exp]	35.6	0.7790
AT5G51970			GroES-like zinc-binding alcoho...		Lus10027410 [exp]	41.9	0.7662
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10010899 [exp]	46.6	0.7747

Compare expression of checked genes

Lus10020871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.