Plant FIBer expression Database

Lus10020872 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G18800 224 / 6e-75 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033505
[exp]
316 / 3e-111 AT3G18800 255 / 3e-87 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G006500
[exp]
276 / 1e-95 AT3G18800 249 / 5e-85 unknown protein
Potri.001G309000
[exp]
266 / 2e-91 AT3G18800 244 / 6e-83 unknown protein
PFAM info
Representative CDS sequence
>Lus10020872 pacid=23177914 polypeptide=Lus10020872 locus=Lus10020872.g ID=Lus10020872.BGIv1.0 annot-version=v1.0
ATGGCGGAATACGAAATCCAACACAATCAGCAGCAAGGGATCCCGAAGGAAACAGCGTTCCAAGCGCTCAACACAATAATCCAGCTCCACTTCGAGAAAA
CTCTGGAGAAGAAGCGCGCGATCGACCTCCAGAAGAAGGAGCTCCACAAATTCTTCCTTCTATTCTTCATCTTCCTCTCCCTCGTCTTCGCCGGAGAAGC
TCAGTCCTCCCGTCTCCAGTGCCGCCACTGCTGGGTGCCCATCACTCTGCTCTCCCTGGCCCACCTCATCTTCTACGTCGCCGTCGCCCAAACCCTAAGG
TGCATCAATGGATTTAAGTATCAGCGCCGTTGCCACAAGCTCACCCTTGCTCTGGCTACTGAGAAGCTTCGGGACCTCAAGATGAGGACCGGCGGCGGGG
GAGGTGGTGGTGGTGGTGGGGAGTATGGGGAAATGATTGTGGTGGGGGATGAGGCGGAGCTTGAGATTCATTACCAGGAGCCGCCGGAGAGTTATTTCGG
CAAGTTTAAGAGGAATTGGGCGTTGCATTTTGGATTCTTGATTTGTATCTATGGGTTCATGATCTCCTCCTCTGTTGTCATTCTCTGCTTTTGA
AA sequence
>Lus10020872 pacid=23177914 polypeptide=Lus10020872 locus=Lus10020872.g ID=Lus10020872.BGIv1.0 annot-version=v1.0
MAEYEIQHNQQQGIPKETAFQALNTIIQLHFEKTLEKKRAIDLQKKELHKFFLLFFIFLSLVFAGEAQSSRLQCRHCWVPITLLSLAHLIFYVAVAQTLR
CINGFKYQRRCHKLTLALATEKLRDLKMRTGGGGGGGGGGEYGEMIVVGDEAELEIHYQEPPESYFGKFKRNWALHFGFLICIYGFMISSSVVILCF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G18800 unknown protein Lus10020872
[exp]
0 1
AT1G61170 unknown protein Lus10018461
[exp]
3.2 0.9295
AT4G38210 ATHEXPALPHA1.23... EXPANSIN 20, expansin A20 (.1) Lus10013849
[exp]
3.5 0.9462
AT1G68400 leucine-rich repeat transmembr... Lus10035138
[exp]
3.5 0.9471
AT1G61170 unknown protein Lus10011222
[exp]
4.4 0.9473
AT3G18800 unknown protein Lus10033505
[exp]
7.4 0.9293
AT1G73620 Pathogenesis-related thaumatin... Lus10009058
[exp]
8.9 0.9411
AT1G68400 leucine-rich repeat transmembr... Lus10031965
[exp]
9.9 0.9316
AT1G70710 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolas... Lus10029071
[exp]
11.2 0.9091
AT5G65360 Histone superfamily protein (.... Lus10025439
[exp]
12.7 0.9354
AT2G32940 AGO6 ARGONAUTE 6, Argonaute family ... Lus10029989
[exp]
13.9 0.9055

Lus10020872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.