Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76880 190 / 8e-54 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 176 / 8e-49 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT5G03680 156 / 1e-41 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT1G33240 138 / 5e-35 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT3G10000 120 / 3e-29 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT5G28300 115 / 2e-27 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 105 / 1e-24 Trihelix Homeodomain-like superfamily protein (.1) AT3G25990 61 / 9e-10 Trihelix Homeodomain-like superfamily protein (.1) AT5G01380 54 / 6e-08 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 51 / 8e-07 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033504 [exp] 728 / 0 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10042806 [exp] 188 / 2e-52 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10018887 [exp] 144 / 4e-37 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10029778 [exp] 144 / 8e-37 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10028584 [exp] 141 / 1e-36 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10014375 [exp] 117 / 3e-28 AT5G03680 296 / 1e-93 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10023872 [exp] 115 / 4e-28 AT5G03680 278 / 3e-88 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10028582 [exp] 114 / 4e-28 AT1G76880 219 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10027718 [exp] 115 / 1e-27 AT5G03680 297 / 3e-95 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G309100 [exp] 368 / 6e-123 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.019G010200 [exp] 343 / 2e-113 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049500 [exp] 168 / 5e-48 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049301 [exp] 168 / 8e-47 AT1G76890 158 / 2e-42 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068400 [exp] 170 / 1e-46 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049700 [exp] 170 / 3e-46 AT1G76890 148 / 5e-38 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 169 / 3e-46 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 159 / 1e-42 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.006G221400 [exp] 158 / 5e-42 AT1G76890 162 / 1e-42 Duplicated homeodomain-like superfamily protein (.2) Potri.011G147400 [exp] 147 / 8e-38 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020873 pacid=23177997 polypeptide=Lus10020873 locus=Lus10020873.g ID=Lus10020873.BGIv1.0 annot-version=v1.0 ATGGAAGTTTCAACTGCACCGCAAACTGGCGGCGGCGGCGCGGCGGCGGCCGAAGAGTACTCAGGTGGAAGGAATCGGTGGCCGTCTCAAGAGGCTGTAG CTCTGTTGAGGATAAGGTCCGAAATGGATGCCAGTTTCAAAGACTCCGGCCTCAGAGGTCCTCTCTGGGAAGAAATCTCCAGGAGAATGAGTGAGTTAGG GTTTTCCAGGAGTGCCAAGAAATGCAAGGAGAAGTTCGAGAACATTCAAAAGTACCATAAGAGAACTAAAGAAGGGAGGTCTAGACGGCAGAATGGAAAG AGCTATAAGTTCTTTCAGCAGTTGGAAGCTATAGATAGAAATAGCCACAATTCGCGACTGGCTAAGGTTCTAGCTGCTGATTCAGTCAACCAGACGAGTG GCGGTGGTGGTGGCGCAATCGATGCTACTCCGTGCTCGGTTTACAGCCCGGTACGTATCCATTTCCTTGATAGCACCTCAACATCGACTACATCCATCAC ACCGAGTAAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCGGAAGGTACGAAGAAGAAGAAGAAACTGACAGAGTTTTTCGATTCTCTGATGGCTAGAGTG ATTGAGAAGCAGGAAAGCTTGCAGAGGAATTTCGCCGAGGCAGTGGAGAGATTCGAAAGGGACCGGATGGCTAGGGACGAAGCGTGGAAGTTGAAGGAAT TGGAGAGGATTAAGAGAGAGCGCGAATTACTAATTAGAGAAAGGGAGACCGTAGCTGCAAAAGATGCAGCTGTGCTCTCTTTCCTGCAGAAGTTCACGAA TCAACCCGGATCATTTCCATTGCCATTGCCATTGCCAATCCCGGAGAGACAGACAGAGAAGCTCCCTATTCGGAAAATACAAACCAACGCAGCACAGGGA TTGGTTCCTCAGGCAAGGTGGCCGAAGGAAGAGATTGAAGCGCTGATAAAGGTGAGGACTAGTTTCGAAGTGAGATACCAAGGGCACGGGCCAAAAGGGC CTCTGTGGATTGAAGTATCGGCGGACATGAGGAGATTAGGGTACAATAGGAACCCCAAGAGGTGCAAGGAGAAATGGGAGAATATGAACAAGTATTTCAA GAGGGTGAAAGAGAGCAGAAGCAGCAAGGCAAGGCCCGTGGATTCGAAAACTTGTCCTTATTTCCATCAGCTCGATGCTCTATACAGCGGGAAGAGAACG AAGCCCGACTCCTCCGCCAATTCCGGTGGTAGTGAGTTGAAGCCCGAGGAGCTCTTGATGCACATGATTCGCCGCCAGGAAGAACTACAACATCCCGAAT CAGCAACAACTGACGATGGTGGGGAAAAGCTGAATGCGGAGGAGAAAGAAGAGAGCGATGGATACCGGAACAATCCGACAGCCACGATGGAACAATCACC CGAAAGAGATGACAGAAGAGGTTCCTACTTGTGCCAGAGCTAA
AA sequence Show only first row Show all	>Lus10020873 pacid=23177997 polypeptide=Lus10020873 locus=Lus10020873.g ID=Lus10020873.BGIv1.0 annot-version=v1.0 MEVSTAPQTGGGGAAAAEEYSGGRNRWPSQEAVALLRIRSEMDASFKDSGLRGPLWEEISRRMSELGFSRSAKKCKEKFENIQKYHKRTKEGRSRRQNGK SYKFFQQLEAIDRNSHNSRLAKVLAADSVNQTSGGGGGAIDATPCSVYSPVRIHFLDSTSTSTTSITPSKEEEEEEEEESEGTKKKKKLTEFFDSLMARV IEKQESLQRNFAEAVERFERDRMARDEAWKLKELERIKRERELLIRERETVAAKDAAVLSFLQKFTNQPGSFPLPLPLPIPERQTEKLPIRKIQTNAAQG LVPQARWPKEEIEALIKVRTSFEVRYQGHGPKGPLWIEVSADMRRLGYNRNPKRCKEKWENMNKYFKRVKESRSSKARPVDSKTCPYFHQLDALYSGKRT KPDSSANSGGSELKPEELLMHMIRRQEELQHPESATTDDGGEKLNAEEKEESDGYRNNPTATMEQSPERDDRRGSYLCQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10020873 [exp]	0	1
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10011495 [exp]	2.2	0.8638
AT2G20830			transferases;folic acid bindin...		Lus10039788 [exp]	3.3	0.8127
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10043208 [exp]	5.1	0.8106
AT3G58090			Disease resistance-responsive ...		Lus10009074 [exp]	5.5	0.8198
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	6.2	0.8438
AT4G03600			unknown protein		Lus10039834 [exp]	6.2	0.8479
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10033504 [exp]	8.4	0.7806
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042470 [exp]	10.2	0.8235
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	13.1	0.8357
AT1G33560		ADR1	ACTIVATED DISEASE RESISTANCE 1...		Lus10032759 [exp]	14.1	0.7820

Compare expression of checked genes

Lus10020873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.