Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33490 538 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT1G44130 407 / 4e-139 Eukaryotic aspartyl protease family protein (.1) AT1G77480 376 / 8e-127 Eukaryotic aspartyl protease family protein (.1.2) AT1G49050 278 / 7e-87 Eukaryotic aspartyl protease family protein (.1.2) AT3G02740 145 / 3e-38 Eukaryotic aspartyl protease family protein (.1) AT1G65240 142 / 4e-37 Eukaryotic aspartyl protease family protein (.1) AT5G36260 132 / 3e-33 Eukaryotic aspartyl protease family protein (.1) AT2G36670 128 / 7e-32 Eukaryotic aspartyl protease family protein (.1.2) AT1G05840 124 / 1e-30 Eukaryotic aspartyl protease family protein (.1) AT5G22850 123 / 4e-30 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033503 [exp] 790 / 0 AT4G33490 560 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10025687 [exp] 392 / 3e-133 AT1G77480 463 / 5e-162 Eukaryotic aspartyl protease family protein (.1.2) Lus10018146 [exp] 389 / 8e-132 AT1G77480 460 / 1e-160 Eukaryotic aspartyl protease family protein (.1.2) Lus10042982 [exp] 292 / 3e-92 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10032485 [exp] 235 / 7e-71 AT1G49050 475 / 6e-163 Eukaryotic aspartyl protease family protein (.1.2) Lus10018148 [exp] 193 / 2e-57 AT1G44130 227 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 128 / 8e-32 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 128 / 9e-32 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 129 / 1e-31 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099200 [exp] 564 / 0 AT4G33490 521 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G069600 [exp] 563 / 0 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099301 [exp] 551 / 0 AT4G33490 503 / 6e-178 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G179900 [exp] 394 / 4e-134 AT1G44130 501 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 386 / 2e-130 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.015G053300 [exp] 301 / 1e-95 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 141 / 1e-36 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 129 / 4e-32 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G096700 [exp] 122 / 1e-29 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.009G001700 [exp] 119 / 1e-28 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10020874 pacid=23177911 polypeptide=Lus10020874 locus=Lus10020874.g ID=Lus10020874.BGIv1.0 annot-version=v1.0 ATGGATCACTTCGTCTGGAAGCAAAACCATCCACTTCCATCGATTCCTTCTCCTGATAAAACCCTCCATTTCCATCCATTGCTCGCAGATCCATCCACAG GCGTAACTCTGTTTTCCCTCTCTTTTTTGTTTCCTCTGATGTTGTTTGTTTTAGTTGAAGTAGGGAAGAAGATGGCCAAAGGGAAGTTGGTGCTTCTGGT TCTAGTTGCTTTTGTTGCTATGTCGATTGTGGGGTTTGCGTCTGGTTCAGGTGATGGGAGTGGTTGGAGTTGGAGGAAGGCAATTTTAGCTAGAGGAGGT TATGATGATGATGGTGGTGGTGAAGCTTCGACTTCTTCAATGGCTTTCAATCGAGGAATTGGTTCCTCTGTTGTGTTCCCGCTTCATGGAAATGTCTACC CAATTGGGTTCTATAATGTGACAGTGTACATAGGCCAACCACCAAAGCCTTATTTTCTTGATGTGGACACTGGAAGTGACCTCACTTGGCTCCAATGTGA TGCTCCTTGTGTGCAATGCATTGAGGCACCTCATCCATATTACAGACCCTCCAATAATCTAGTTCCTTGCAAGGACCCCATATGCGCATCCTTACACCCA CCTGGTCACAAATGTAGAGACAATGAACAGTGTGACTACGAGGTTGAGTATGCAGATGGTGGTTCATCCCTTGGCGTCCTTGTCAAAGACATGTTTCTTC TCAACTTCACTAATGGTAGATATCATAATCCTCTTCTCTCACTCGGATGTGGATACGATCAACTTCCAGGGGGATCTTACCATCCGATAGACGGTGTGCT TGGACTTGGCAGTGGCAAAGCAGGCATCTTGTCTCAACTTAGCAGTTATGGTGTACTGAGGAACGTAGTTGGCCATTGTTTGAGCAGTAGAGGTGGAGGG TTTCTCTTTTTCGGTGATGATGTTTACGATTCATCTAGAGTTTCCTGGACACCGATGTTGCGCCATGATTCAAAGCACTATTCTCCTGGATATGCTGAGC TGCTGTTTGGCGGGAAAGCAACTGGAATAAAAAACCTGCTTATAGCTATAGACAGTGGGAGCTCCTACACTTACTTGGGCTCCAAGGCATACCAAGTACT GATTCAGCTAGTGAACAAAGAACTATCAGGAAAGCCATTAAGAGAAGACTGGAATGACCATACTCTCCCAGTGTGCTGGAAAGGGCAGAGACCTTTCAAA AGCATTCGCGACGTGAGGAAATACTTCAAGCCTTTGGCACTCACCTTCCGAGATGGTTGGAGATCCAAGACGAAATACGAAATCCCACCGGAATCTTACC TTATCATCTCTTCTAGGGGAAATGTGTGCTTGGGGGTTCTGAATGGAACTGAGGTTGGCTTGCAGGATCTCACTGTCCTTGGAGACGTCTCGATGCAAGA TCGAATGGTGATCTATGACAATGAGAGGCAAATGATTGGATGGAGTGATGCCAACTGCGACCGAATTCCCAAGTTCTCTTCTGTCTTCTGA
AA sequence Show only first row Show all	>Lus10020874 pacid=23177911 polypeptide=Lus10020874 locus=Lus10020874.g ID=Lus10020874.BGIv1.0 annot-version=v1.0 MDHFVWKQNHPLPSIPSPDKTLHFHPLLADPSTGVTLFSLSFLFPLMLFVLVEVGKKMAKGKLVLLVLVAFVAMSIVGFASGSGDGSGWSWRKAILARGG YDDDGGGEASTSSMAFNRGIGSSVVFPLHGNVYPIGFYNVTVYIGQPPKPYFLDVDTGSDLTWLQCDAPCVQCIEAPHPYYRPSNNLVPCKDPICASLHP PGHKCRDNEQCDYEVEYADGGSSLGVLVKDMFLLNFTNGRYHNPLLSLGCGYDQLPGGSYHPIDGVLGLGSGKAGILSQLSSYGVLRNVVGHCLSSRGGG FLFFGDDVYDSSRVSWTPMLRHDSKHYSPGYAELLFGGKATGIKNLLIAIDSGSSYTYLGSKAYQVLIQLVNKELSGKPLREDWNDHTLPVCWKGQRPFK SIRDVRKYFKPLALTFRDGWRSKTKYEIPPESYLIISSRGNVCLGVLNGTEVGLQDLTVLGDVSMQDRMVIYDNERQMIGWSDANCDRIPKFSSVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33490			Eukaryotic aspartyl protease f...		Lus10020874 [exp]	0	1
AT2G34960		CAT5	cationic amino acid transporte...		Lus10018691 [exp]	3.9	0.8100
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	4.1	0.8313
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10006406 [exp]	7.7	0.8187
AT5G10530			Concanavalin A-like lectin pro...		Lus10033778 [exp]	14.7	0.7876
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10025549 [exp]	14.8	0.6743
AT4G33490			Eukaryotic aspartyl protease f...		Lus10033503 [exp]	17.3	0.7618
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10021261 [exp]	20.7	0.7846
AT5G38290			Peptidyl-tRNA hydrolase family...		Lus10031327 [exp]	26.5	0.8034
AT2G22420			Peroxidase superfamily protein...		Lus10035925 [exp]	26.8	0.7620
AT5G57910			unknown protein		Lus10035808 [exp]	27.9	0.7651

Compare expression of checked genes

Lus10020874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.