Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63800 784 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT1G77410 764 / 0 BGAL16 beta-galactosidase 16 (.1) AT2G16730 590 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT2G28470 583 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G36360 580 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT4G35010 578 / 0 BGAL11 beta-galactosidase 11 (.1) AT4G38590 570 / 0 BGAL14 beta-galactosidase 14 (.1.2) AT3G13750 563 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT1G45130 560 / 0 BGAL5 beta-galactosidase 5 (.1) AT5G63810 554 / 0 BGAL10 beta-galactosidase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033502 [exp] 1293 / 0 AT5G63800 844 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10020877 [exp] 1050 / 0 AT2G16730 733 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10033500 [exp] 1046 / 0 AT5G63800 757 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10008974 [exp] 785 / 0 AT4G26140 1068 / 0.0 beta-galactosidase 12 (.1.2) Lus10028538 [exp] 773 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1) Lus10018138 [exp] 757 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1) Lus10033427 [exp] 730 / 0 AT1G77410 1016 / 0.0 beta-galactosidase 16 (.1) Lus10008259 [exp] 727 / 0 AT1G77410 908 / 0.0 beta-galactosidase 16 (.1) Lus10014126 [exp] 606 / 0 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069200 [exp] 883 / 0 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Potri.005G180600 [exp] 794 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.013G105100 [exp] 790 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.002G080700 [exp] 766 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.009G134400 [exp] 621 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.004G174800 [exp] 613 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.005G232600 [exp] 590 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 577 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 577 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 565 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10020875 pacid=23177988 polypeptide=Lus10020875 locus=Lus10020875.g ID=Lus10020875.BGIv1.0 annot-version=v1.0 ATGGACTGTACGCGGCGGTGGGGCTGGTTATGGGCGGCGGTTGTAGTGGTGGCAACGACAACTATGGCGGCGGTGGCTGCTGGAGGGAATGTGACGTATG ATGGAAGGGCATTGATAATCGACGGTGAGAGGAGGATGCTTTTTTCCGGCTCCATTCACTATCCTCGGAGCACTCCTCAGATGTGGGAATCTTTGATTGC AAAAGCCAAGCAAGGAGGAGTGGACGTTATTGAGACCTATGTCTTCTGGAACCTCCATGAGCCCCAACCCGGCCAGTACGATTTCAGTGGAAGAAACGAC ATAGTGAAGTTCATAAAAGAGGTCCAAGCACAAGGACTGTACGTTGCGATTCGAATCGGTCCCTTCATCGAGAGCGAGTGGACGTACGGAGGCCTTCCCT TCTGGCTTCATAACATCCCCGGCATCGTCTATAGAACCGATAACGAACCTTTCAAGCCATTACTTCTTCATTATCAGAGAGTTATGCAGAGCTTCACCAC GAAAATAGTGGACCTCATGAAGTCAGAGGGCCTGTTCGCTTCGCAAGGCGGCCCTATAATATTGGCACAGATCGAGAATGAGTATCAGAATATTGAGGCA GCATTCGCAGAGGGGCCATCATATGTGAAGTGGGCAGCTAATATGGCAGTTGAGCTTCAAACTGGTGTCCCTTGGGTTATGTGCAAGCAGACTGATGCTC CCGACCCTGTGATAAACACATGTAACGGTATGAGATGCGGAGATACTTTCACAGGGCCTAACTCACCATCAAAGCCTGCACTTTGGACGGAGAACTGGAC ATCATTCCTACAACGGTTCGGAGAGGAAACGTACCTGAGATCGGCCGAAGACATTGCCTTCCACACCTTACTCTTCATCGTTGCAAAGAACGGAAGCTTT ATCAACTACTACATGATGTGGGAATCTTTGATTGCAAAAGCCAAGCAAGGAGGAGTGGACGTTATTGAGACCTATGTCTTCTGGAACCTCCATGAGCCCC AACCCGGCCAGTACGATTTCAGTGGAAGAAACGACATAGTGAAGTTCATAAAGGATGTCCAGGCGCAAGGACTGTATGTTGCTCTTCGGATCGGTCCCTT CATCGAGAGCGAGTGGACTTACGGAGGCCTTCCCTTCTGGCTTCATAACATCCCCGGCATCGTCTATAGAACCGATAACGAACCTTTCAAGAGAGTTATG CAGAGCTTCACCACGAAAATAGTGGACCTCATGAAGTCAGAGGGCCTGTTCGCTTCGCAAGGCGGCCCTATAATATTGGCACAGATCGAGAATGAGTATC AGAATATTGAGGCAGCATTCGCAGAGGGGCCATCATATGTGAAGTGGGCAGCTAATATGGCAGTTGAGCTTCAAACTGGTGTCCCTTGGGTTATGTGCAA GCAGACTGATGCTCCCGACCCTGTGATAAACACATGTAACGGTATGAGATGCGGAGATACTTTCACAGGGCCTAACTCACCATCAAAGCCTGCACTTTGG ACGGAGAACTGGACATCATTCCTACAACGGTTCGGAGAGGAAACGTACCTGAGATCGGCCGAAGACATTGCCTTCCACACCTTACTCTTCATCGTTGCAA AGAACGGAAGCTTTATCAACTACTACATGTATCATGGAGGGACTAATTTCGGGAGAAGCGGGGCAGCGTATATGGTGACAAGCTATTACGACCAAGCTCC GATCGACGAATACGGTTTAATCAGGGAGCCGAAATGGAGCCATCTTAAGGAGATGCACGCTGCGGTTAAATCGTGTTCGTCGACATTGCTAAATGGAGTC AAGACAAGCTTCTCCCTCGGAGAATTCCAGCAGGCATATGTCTACGAAGACTCAAAAAGCTGTGCAGCATTTCTGGTTAACAGTGGAAGCAAGAACGCGA CAGTTGTGTTTCGAAACAGAACGTTCGAACTGATACCTAAGTCGATTAGCATTCTCCCCGACTGTCGAAACGTAGTCTACAACTCGGGCAAGGCGAGTAC AGGATTCAGCAACAGAAGGGAAACTGTAAGCAAGATTCTTGACGGTACAGAGAATCAATGGGAAGAATATAGAGATCCTGTACCGAGTTTTGCAGACACT TCGATACGGTTCAATCAACTCGAGGAGCAAACTATCATAACCAATGATTCTTCTGATTACCTTTGGTACACCTTGAGCTTTCAGCCAAATTCGACGTCTT GCGCAGCAGCAAACTTGCGAGTGAAGTTTCTGTCACATCTTATGTATACCTATGTCAACGGCAAATATATAGGGAACTCGGGAGATCAGAGGAAGGAAGT CCAGATTGAAGCTCCAATCTCACTGTGTCAAGCAGTGACCAATATTTCCATACTGAGTGTTATGGTGGGACTATGGGATTCTGGACCTTTAATGGAGAAG AGACGTGCAGGATTAACTGATGTAGAAATCAAATGCGATGATTTTGCATACAACGTTACAAGCAATGACTGGGGCTATCAGGTGGGTTTTGAAGGGGAGA GCTTAGAGATATACACGCAGGAAAATAGTGATAGAGTGGAATGGGATCCAATCTCTCGTAATGCTGATACATCACCCAAGTGGTTCAGAACAACATTTGA TGCACCTCTGGGAGATGAACCAGTGGCACTGAACCTGAGCAGCATGGGAAAAGGACAGGCATGGGTGAATGGAGAGGGCATAGGGCGCTATTGGCTTTCC ATCAAAACCAAGAATGGAAATCCTTCTCAGACACTGTACCATGTTCCAAGGGAGTTCTTAAATCCCAAGGACAATCTACTAGTAATACAGGAAGAATCCA GAGGGGATCCATTCCAAATTACTCTGGTTACCATATCAACTGCCACAATGGGAAAACAGACGCACAGCAATTATTTTATCGGTTGA
AA sequence Show only first row Show all	>Lus10020875 pacid=23177988 polypeptide=Lus10020875 locus=Lus10020875.g ID=Lus10020875.BGIv1.0 annot-version=v1.0 MDCTRRWGWLWAAVVVVATTTMAAVAAGGNVTYDGRALIIDGERRMLFSGSIHYPRSTPQMWESLIAKAKQGGVDVIETYVFWNLHEPQPGQYDFSGRND IVKFIKEVQAQGLYVAIRIGPFIESEWTYGGLPFWLHNIPGIVYRTDNEPFKPLLLHYQRVMQSFTTKIVDLMKSEGLFASQGGPIILAQIENEYQNIEA AFAEGPSYVKWAANMAVELQTGVPWVMCKQTDAPDPVINTCNGMRCGDTFTGPNSPSKPALWTENWTSFLQRFGEETYLRSAEDIAFHTLLFIVAKNGSF INYYMMWESLIAKAKQGGVDVIETYVFWNLHEPQPGQYDFSGRNDIVKFIKDVQAQGLYVALRIGPFIESEWTYGGLPFWLHNIPGIVYRTDNEPFKRVM QSFTTKIVDLMKSEGLFASQGGPIILAQIENEYQNIEAAFAEGPSYVKWAANMAVELQTGVPWVMCKQTDAPDPVINTCNGMRCGDTFTGPNSPSKPALW TENWTSFLQRFGEETYLRSAEDIAFHTLLFIVAKNGSFINYYMYHGGTNFGRSGAAYMVTSYYDQAPIDEYGLIREPKWSHLKEMHAAVKSCSSTLLNGV KTSFSLGEFQQAYVYEDSKSCAAFLVNSGSKNATVVFRNRTFELIPKSISILPDCRNVVYNSGKASTGFSNRRETVSKILDGTENQWEEYRDPVPSFADT SIRFNQLEEQTIITNDSSDYLWYTLSFQPNSTSCAAANLRVKFLSHLMYTYVNGKYIGNSGDQRKEVQIEAPISLCQAVTNISILSVMVGLWDSGPLMEK RRAGLTDVEIKCDDFAYNVTSNDWGYQVGFEGESLEIYTQENSDRVEWDPISRNADTSPKWFRTTFDAPLGDEPVALNLSSMGKGQAWVNGEGIGRYWLS IKTKNGNPSQTLYHVPREFLNPKDNLLVIQEESRGDPFQITLVTISTATMGKQTHSNYFIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10020875 [exp]	0	1
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10041423 [exp]	3.2	0.9406
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10038435 [exp]	7.1	0.9213
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	7.9	0.9285
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	9.8	0.9257
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10023610 [exp]	12.3	0.9067
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	13.9	0.9229
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	20.1	0.9045
AT3G26700			Protein kinase superfamily pro...		Lus10041509 [exp]	20.2	0.8760
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	20.4	0.8909
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	20.7	0.9045

Compare expression of checked genes

Lus10020875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.