Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33480 251 / 2e-81 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033501 [exp] 413 / 1e-144 AT4G33480 308 / 5e-104 unknown protein Lus10003851 [exp] 222 / 2e-69 AT4G33480 293 / 2e-97 unknown protein Lus10002086 [exp] 202 / 1e-61 AT4G33480 285 / 1e-93 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099900 [exp] 247 / 8e-80 AT4G33480 340 / 3e-116 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12527 [flax] [poplar] DUF3727 Protein of unknown function (DUF3727)
Representative CDS sequence Show only first row Show all	>Lus10020876 pacid=23177926 polypeptide=Lus10020876 locus=Lus10020876.g ID=Lus10020876.BGIv1.0 annot-version=v1.0 ATGGCGATTTCTTCCCTCTCCTCTATCCCCACAGCAATTCACCAGCTCCTCCTCAAATCCAACATTCTCTCTCCTCACTCCTTCCTCCCCCCTTCTTCCT TCGCGTTTCCCGCCTCCACAGTCTCCATCTCTAACCATGTCACCTCACTTTCTCTCGCCGTATGCCGAGCTTCCACCTCCTCGTCTTCATCTTCCTCCTC GCCTCGCAAGACGACCACCAAGCCAAAGAAGAAGAAGAAGAAAAGCGGCGGCGGAAGCGGCGGTGGTCATGACGCCGCTTTGCAGAATTTGAGCTTGACC GATGTTGAAATTGTCAAAGCTCCCGACGACGACGACGATTCCGATAATGATTATGTCGACGACGTTGAAAGCCATGGTGTCTCGAGGTACCGTCCTCAAC CGCCTACTCCAATGCCCAAACCGCCCACCGGCTTCATCGTATCCGCCTCCGGAAAGGTCTCCATGACTTCCGAAAACCGGATTGCCACAATTGTTGATGC TGCAAATAATAGTCCATTAGAGTGCATAATAAGGAGGGTGTCTAGAACTTCACAAGGGGCCGAGTGTATGCTCCTTTGCCCGGCTGATACGCCGGTTTAT GTGTTAAAGAGTAGTGCCGTTGATGGATGGACGGCGGCCAGTGATGATGAAGTGGAGGCTATCCTTCCAGCTGCTGCATATGCTTTGGCAAAGATACATT TGCATCTTGTCCATAGCGGATTCTGTTACACATTAAGGGGAGCATTCTTTTTCTCAGAGGATGACATCTTTGATTTCAGTACAGATGACGAAGGAATTGC GGCTGGCTTACCAACAGAGGGTGTTGAAATTACTTACTTCCATCTTGACGGTGAACATTTTATGTTATATACACCATTAGAGCCAATTCTTTTTGTCGCT GTTAAGGATCAAGATGGGGTGTTGCAAATCGCCAATGATGAACTATTGGATGACCCGGCTATCATCAGCATGATTGACGAGGAGACTGAATTTAATGCTC TGGTGGAGGAAGAAGCTGCTCTGATGAATTCTTTGATGGGCAAGGAGTGA
AA sequence Show only first row Show all	>Lus10020876 pacid=23177926 polypeptide=Lus10020876 locus=Lus10020876.g ID=Lus10020876.BGIv1.0 annot-version=v1.0 MAISSLSSIPTAIHQLLLKSNILSPHSFLPPSSFAFPASTVSISNHVTSLSLAVCRASTSSSSSSSSPRKTTTKPKKKKKKSGGGSGGGHDAALQNLSLT DVEIVKAPDDDDDSDNDYVDDVESHGVSRYRPQPPTPMPKPPTGFIVSASGKVSMTSENRIATIVDAANNSPLECIIRRVSRTSQGAECMLLCPADTPVY VLKSSAVDGWTAASDDEVEAILPAAAYALAKIHLHLVHSGFCYTLRGAFFFSEDDIFDFSTDDEGIAAGLPTEGVEITYFHLDGEHFMLYTPLEPILFVA VKDQDGVLQIANDELLDDPAIISMIDEETEFNALVEEEAALMNSLMGKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33480			unknown protein		Lus10020876 [exp]	0	1
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10011282 [exp]	1.4	0.8792
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	4.0	0.8625
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10027506 [exp]	4.2	0.8371
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10040477 [exp]	5.5	0.8666
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10033809 [exp]	7.5	0.8655
AT4G37920			unknown protein		Lus10029560 [exp]	9.2	0.8111
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	13.6	0.8500
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	14.1	0.8161
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10013370 [exp]	15.1	0.8024
AT4G33760			tRNA synthetase class II (D, K...		Lus10037243 [exp]	17.3	0.8009

Compare expression of checked genes

Lus10020876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.