Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63800 730 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT1G77410 720 / 0 BGAL16 beta-galactosidase 16 (.1) AT2G16730 561 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT4G35010 547 / 0 BGAL11 beta-galactosidase 11 (.1) AT4G36360 532 / 7e-180 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 529 / 8e-179 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT1G45130 525 / 1e-178 BGAL5 beta-galactosidase 5 (.1) AT2G28470 527 / 6e-178 BGAL8 beta-galactosidase 8 (.1.2) AT4G26140 521 / 4e-177 BGAL12 beta-galactosidase 12 (.1.2) AT5G56870 513 / 7e-174 BGAL4 beta-galactosidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033502 [exp] 1121 / 0 AT5G63800 844 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10033500 [exp] 1098 / 0 AT5G63800 757 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10020875 [exp] 1048 / 0 AT5G63800 785 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10028538 [exp] 727 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1) Lus10018138 [exp] 714 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1) Lus10008259 [exp] 693 / 0 AT1G77410 908 / 0.0 beta-galactosidase 16 (.1) Lus10033427 [exp] 684 / 0 AT1G77410 1016 / 0.0 beta-galactosidase 16 (.1) Lus10014126 [exp] 571 / 0 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10024292 [exp] 560 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069200 [exp] 823 / 0 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Potri.013G105100 [exp] 757 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.005G180600 [exp] 747 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.002G080700 [exp] 716 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.004G174800 [exp] 587 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.009G134400 [exp] 570 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.005G232600 [exp] 558 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 544 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 530 / 3e-179 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 530 / 5e-179 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10020877 pacid=23178005 polypeptide=Lus10020877 locus=Lus10020877.g ID=Lus10020877.BGIv1.0 annot-version=v1.0 ATGGTGGCCGTGGCGGCGACAATGGTGGCTGGAATGAATGTGACGTATGATGGAAGGGCATTGATAATCAACGGTGAACGGAGGATGCTGTTTTCCGGTT CTATTCACTATCCTCGAAGCACTCCTCAGATGTGGGGATCTTTGATTGCAAAAGCCAAGCAAGGAGGAGTTGACGTTATTGAGACCTATGTCTTCTGGAA CCTCCATGAGCCCCAACCTGGCCAGTACGATTTCAGTGGAAGAAACGACATAGTGAAGTTCATAAAGGATGTCCAGGCGCAAGGACTGTATGTTGCTCTT CGGATCGGTCCCTTCATCGAGAGCGAGTGGACGTACGGAGGCCTTCCCTTCTGGCTTCATAACATCCCTGGCATTGTTTACAGAACTGATAATCAGCCTT TCAAGTGCGCAGCTAATATGGCAGTTGAGCTTCAAACTGGTGTCCCTTGGGTTATGTGCAAGCAGACTGATGCTCCCGACCCTCTGATAAACACATGTAA TGGTATGAGATGCGGGCAGACTTTCTCGGGGCCTAACTCACCATCAAAGCCTGCACTTTGGACGGAGAACTGGACATCATTCCTACAACGGTTCGGAGAC GAAACGTACCTAAGGTCGGCTGAAGACATTGCCTTCCACACCTTACTCTTCATCCTTGCCAAGAACGGAAGCTTTATCAACTACTACATGTATCATGGAG GGACTAATTTCGGGAGAAGCGGAGCAGCATATATGGCGACAAGCTATTACGACCAAGCTCCTCTTGATGAATACGGTTTAACCAGAGAGCCGAAATGGAG CCATCTCAAGGAGATGCATGCTGCAGTTAAATCGTGTTCGTCGACATTGCTAAATGGAGTCAAGACAATCACCTCACTGGGACGATTCCAGCAGGCATAT GTCTATGAAGACTCGAGAGCTACGAAGGGAAACTGTGCAGCATTTCTAGTTAACAGTGGAAGCCAGAATGCAGCAGTTGTGTTTCGAAATGCAAAATTTG AGCTTCTACCTCATTCGATTAGCATTCTTCCCGACTGTCGAAACGTAGTCTACAGCTCGGGCAAGGCGAGTTCAGGATTCAGCAACAGAAGGGAAACTAT AAGCAAGATTCTGGATGGTAGAGCGAATCGATGGGAAGAATTCAGAGACCCCATACCGAGTTTCTTTGACAGCAAGATAAGATTCAATCAACTAGAGGAG CAAACTGGCATAACCAATGATTTGTCTGATTACCTTTGGTACACGTTGAGCTTTCAGCCAAATTCCACGTCTTCCACAGCAGCAAAATTGCGAGTGAGGT TTCTGTCACATGTCATGTATGCCTATGTCAACGGCAAATATGCAGGTTCAGCTATAGGGAACTCAGGAACTCAGAAGACGGCAGGCCAGCTTGAAGCTCC AATCTCACTAGGTCAAGCAACGAACAGTATTTCCATACTGAGTGCTATGGTGGGACTTTGGGATTCTGGAGCTTTCCTGGAGAAGAGACGTGCAGGATTA ACTGATGTAGAAATCCAATGCAATAATGTTTCACACAATTTCACAAGTCATGCTTGGGGCTATAAGGTGGGTTTTGAAGGAGAGAGCTTAGAAATATACG CGCCGAAAAATACTAATAGAGTCCGATGGGGTCCAATCTCTAGTGCTGTTGATACATCACCCAAGTGGTTCAGAACAACATTTGATGCACCTCTGGGAGA TAAACCAGTGGCACTAAACCTAAGCAGCATGGGAAAAGGACAAGCTTGGGTGAATGGAGAGGGCATAGGGCGCTATTGGGTTTCCATTAAAACGAAGAAA GGAACTCCTTCTCAGACACTGTACCACGTTCCGAGGGAGTTCTTAAATCCCAAGGACAATCTACTAGTAATACAGGAAGAATCCACCGGGAATCCATTCC AAATTACTCTTGTTACCATATCAACTATCACCAAAATGGAATGA
AA sequence Show only first row Show all	>Lus10020877 pacid=23178005 polypeptide=Lus10020877 locus=Lus10020877.g ID=Lus10020877.BGIv1.0 annot-version=v1.0 MVAVAATMVAGMNVTYDGRALIINGERRMLFSGSIHYPRSTPQMWGSLIAKAKQGGVDVIETYVFWNLHEPQPGQYDFSGRNDIVKFIKDVQAQGLYVAL RIGPFIESEWTYGGLPFWLHNIPGIVYRTDNQPFKCAANMAVELQTGVPWVMCKQTDAPDPLINTCNGMRCGQTFSGPNSPSKPALWTENWTSFLQRFGD ETYLRSAEDIAFHTLLFILAKNGSFINYYMYHGGTNFGRSGAAYMATSYYDQAPLDEYGLTREPKWSHLKEMHAAVKSCSSTLLNGVKTITSLGRFQQAY VYEDSRATKGNCAAFLVNSGSQNAAVVFRNAKFELLPHSISILPDCRNVVYSSGKASSGFSNRRETISKILDGRANRWEEFRDPIPSFFDSKIRFNQLEE QTGITNDLSDYLWYTLSFQPNSTSSTAAKLRVRFLSHVMYAYVNGKYAGSAIGNSGTQKTAGQLEAPISLGQATNSISILSAMVGLWDSGAFLEKRRAGL TDVEIQCNNVSHNFTSHAWGYKVGFEGESLEIYAPKNTNRVRWGPISSAVDTSPKWFRTTFDAPLGDKPVALNLSSMGKGQAWVNGEGIGRYWVSIKTKK GTPSQTLYHVPREFLNPKDNLLVIQEESTGNPFQITLVTISTITKME

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	0	1
AT5G65550			UDP-Glycosyltransferase superf...		Lus10008956 [exp]	2.0	0.8905
					Lus10033476 [exp]	3.5	0.8860
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10019692 [exp]	4.5	0.8708
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034390 [exp]	4.6	0.8794
					Lus10008155 [exp]	4.6	0.8649
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	4.9	0.8692
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10007210 [exp]	5.2	0.8606
AT4G27290			S-locus lectin protein kinase ...		Lus10037731 [exp]	5.9	0.8692
AT1G33970			P-loop containing nucleoside t...		Lus10003732 [exp]	6.2	0.8528
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	6.3	0.8626

Compare expression of checked genes

Lus10020877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.