Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24850 716 / 0 CRY3 cryptochrome 3 (.1) AT2G47590 199 / 5e-58 PHR2 photolyase/blue-light receptor 2 (.1) AT3G15620 153 / 2e-40 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT1G04400 124 / 4e-30 FHA, AT-PHH1, CRY2, ATCRY2 cryptochrome 2 (.1.2) AT4G08920 99 / 1e-21 OOP2, HY4, BLU1, CRY1, ATCRY1 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) AT4G25290 66 / 3e-11 DNA photolyases;DNA photolyases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033499 [exp] 594 / 0 AT5G24850 440 / 4e-153 cryptochrome 3 (.1) Lus10007880 [exp] 190 / 4e-54 AT2G47590 521 / 0.0 photolyase/blue-light receptor 2 (.1) Lus10011822 [exp] 123 / 1e-29 AT1G04400 781 / 0.0 cryptochrome 2 (.1.2) Lus10021188 [exp] 121 / 2e-29 AT1G04400 747 / 0.0 cryptochrome 2 (.1.2) Lus10022095 [exp] 122 / 3e-29 AT3G15620 725 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10033446 [exp] 97 / 5e-21 AT4G08920 1009 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10020930 [exp] 92 / 2e-19 AT4G08920 899 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10000521 [exp] 73 / 6e-14 AT3G15620 295 / 7e-98 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10031137 [exp] 63 / 4e-10 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G277500 [exp] 741 / 0 AT5G24850 781 / 0.0 cryptochrome 3 (.1) Potri.002G204000 [exp] 195 / 3e-56 AT2G47590 530 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.014G128500 [exp] 195 / 3e-56 AT2G47590 540 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.003G060000 [exp] 144 / 4e-37 AT3G15620 908 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Potri.010G071200 [exp] 110 / 2e-25 AT1G04400 799 / 0.0 cryptochrome 2 (.1.2) Potri.002G096900 [exp] 108 / 8e-25 AT4G08920 1017 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.005G164700 [exp] 107 / 2e-24 AT4G08920 999 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.015G129500 [exp] 70 / 2e-12 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.008G166632 [exp] 64 / 1e-11 AT1G04400 249 / 5e-80 cryptochrome 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03441 [flax] [poplar] FAD_binding_7 FAD binding domain of DNA photolyase CL0039 [flax] [poplar] HUP PF00875 [flax] [poplar] DNA_photolyase DNA photolyase
Representative CDS sequence Show only first row Show all	>Lus10020878 pacid=23177898 polypeptide=Lus10020878 locus=Lus10020878.g ID=Lus10020878.BGIv1.0 annot-version=v1.0 ATGGCGACTACCTCATCCACAACAACTTTCCCGGTGCCCGAACTCGCCGCCGACGAAACGGAACGAATCGCCGAGCAGACCTTTCAGAGATACTCTTCAG ACAATACAATCAAAAGAAACGGCTCGGGAACCTCCATTGTTTGGTTTAGGTATGATCTCAGAGTTATGGACAACGAGGCTCTCTACAAGGCTTGGATTTC TTCCGAATCGATTCTCCCCGTCTATTGTTTCGATCCTCGCCATTTCCAATCCACTCACTTCTTCAGATTCCCCAAAACTGGAGCTTTGAGAGGCCAGTTT CTAATAGAGTGTTTGGCTGACCTGAGGAAGAATCTTATGAAGAGAGGGCTGAACCTTGTGATTCGCCATGGGAAGCCTGAAGATATCATCCCTGCTCTCG CCAACCAATTCTCTGCTCACACAATATATGCACAAAAGGAAACGTGTAGTGAAGAGTTGAGAGTTGAGAAGCTTGTGTTGGAGAAACTAAATTTGACTCC GACGATTCTTCGACTGGTTTGGGGAAGCACAATGTACCATCTCGACGACCTTCCCTTTGATGCTCATACTGTTCCTGATGTCTACACACAGTTCCGCAAG GCAAGCCAGAGCGCGAAATCCAGAATCAGGGAGTGTGTTAAGCTTCCCATGTCTCTCGCACCGCTTCCATTAGTGGCCGTGGAAGATTGGGGGAGCATTC CAACGCAGGTTAGCAAAGGGATGAGGTTTGTTGGAGGTGAGACTGCTGCAATAGGCAGACTGCATGAATACTTGTGGCACAAGGCAAGATTGTTTTACGA AATATCAACAGACTTGCTTTGCGTGTATAAGGAGACGAGGAACGGGATGCTAGGGTCCGATTACTCCACCAAATTCTCCCCCTGGCTGGCCTCTGGATGC ATTTCGCCGCGCTTCATTCACCAAGAGGTGAAGAGGTATGAAATGGAAAGGCTAGCAAATGCTTCCACTTACTGGGTATTGTTCGAGCTACTCTGGAGAG ATTACTTCCGCTTTATCTCGATCAAACATGGAAACTCCATTTTCCAGTTAGGTGGCCCAAGAAGAGTTGAGAAAAGATGGAGTCAGGACCAGAAGCTGTT CGAATCCTGGAGAGATGGTTGTACAGGTTATCCTTTGATAGATGCTAACATGAAGGAGCTGTCCGCTACTGGTTTCATGTCAAATCGAGGAAGGCAGATA GTATGCTCATTCCTGGTTAGGGACATGGGTATAGACTGGAGAATGGGGGCCGAATGGTTCGAGACTTGCCTATTAGATTATGATCCCTGTTCTAATTATG GCAATTGGACATATGGTGCAGGGGTCGGAAACGATCCGAGAGAAGATCGATATTTCAGCATCCCAAAGCAAGCACAGAGTTATGATGCTGAAGGAGAGTA TGTGTCATACTGGATCCCCCAGCTGCAAAGGCTTCCCAAGGAGTCTCGTCACTTTCCTGGGAAATCTTACATCGATCAAGTTGTACCTCTCAAGTTTGGT GCCAGGCCTAATTATAAGAGCCATGCTGAAGCCAGAGCGACCAGATCAGGAAACAAGAGATTTAACTAA
AA sequence Show only first row Show all	>Lus10020878 pacid=23177898 polypeptide=Lus10020878 locus=Lus10020878.g ID=Lus10020878.BGIv1.0 annot-version=v1.0 MATTSSTTTFPVPELAADETERIAEQTFQRYSSDNTIKRNGSGTSIVWFRYDLRVMDNEALYKAWISSESILPVYCFDPRHFQSTHFFRFPKTGALRGQF LIECLADLRKNLMKRGLNLVIRHGKPEDIIPALANQFSAHTIYAQKETCSEELRVEKLVLEKLNLTPTILRLVWGSTMYHLDDLPFDAHTVPDVYTQFRK ASQSAKSRIRECVKLPMSLAPLPLVAVEDWGSIPTQVSKGMRFVGGETAAIGRLHEYLWHKARLFYEISTDLLCVYKETRNGMLGSDYSTKFSPWLASGC ISPRFIHQEVKRYEMERLANASTYWVLFELLWRDYFRFISIKHGNSIFQLGGPRRVEKRWSQDQKLFESWRDGCTGYPLIDANMKELSATGFMSNRGRQI VCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQSYDAEGEYVSYWIPQLQRLPKESRHFPGKSYIDQVVPLKFG ARPNYKSHAEARATRSGNKRFN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24850		CRY3	cryptochrome 3 (.1)		Lus10020878 [exp]	0	1
AT5G24850		CRY3	cryptochrome 3 (.1)		Lus10033499 [exp]	1.0	0.9524
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10007308 [exp]	3.7	0.9176
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10033322 [exp]	5.7	0.8924
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006620 [exp]	6.3	0.8889
AT2G41040			S-adenosyl-L-methionine-depend...		Lus10008815 [exp]	7.9	0.8977
AT5G50100			Putative thiol-disulphide oxid...		Lus10004232 [exp]	7.9	0.8817
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	9.5	0.8676
AT5G50100			Putative thiol-disulphide oxid...		Lus10042142 [exp]	11.4	0.8621
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10029255 [exp]	13.2	0.8846
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022215 [exp]	14.8	0.8193

Compare expression of checked genes

Lus10020878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.