Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64600 593 / 0 O-fucosyltransferase family protein (.1) AT1G22460 484 / 3e-167 O-fucosyltransferase family protein (.1) AT2G37980 387 / 5e-128 O-fucosyltransferase family protein (.1) AT3G54100 384 / 5e-127 O-fucosyltransferase family protein (.1) AT5G01100 366 / 3e-120 O-fucosyltransferase family protein (.1) AT5G35570 363 / 1e-118 O-fucosyltransferase family protein (.1) AT1G14020 339 / 3e-111 O-fucosyltransferase family protein (.1) AT3G02250 336 / 6e-110 O-fucosyltransferase family protein (.1) AT2G03280 332 / 1e-108 O-fucosyltransferase family protein (.1.2) AT5G15740 327 / 3e-106 RRT1 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033494 [exp] 513 / 1e-180 AT1G22460 380 / 2e-128 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 490 / 6e-170 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10020943 [exp] 439 / 9e-149 AT1G22460 594 / 0.0 O-fucosyltransferase family protein (.1) Lus10028253 [exp] 401 / 2e-134 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1) Lus10040236 [exp] 391 / 1e-130 AT2G37980 573 / 0.0 O-fucosyltransferase family protein (.1) Lus10021119 [exp] 376 / 1e-123 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10017190 [exp] 374 / 5e-123 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 370 / 1e-121 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 367 / 6e-120 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G059600 [exp] 640 / 0 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 488 / 5e-169 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 480 / 4e-166 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 385 / 2e-127 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 387 / 3e-127 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 366 / 6e-120 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 348 / 7e-115 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 343 / 1e-112 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 339 / 2e-111 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 338 / 8e-111 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10020882 pacid=23178020 polypeptide=Lus10020882 locus=Lus10020882.g ID=Lus10020882.BGIv1.0 annot-version=v1.0 ATGTTGAACAGCAAATCCAATCTCCATGGGAGGAGTTCTTCTTCTTGGCTCTTCCGCTCTAGAAGGTTGACGCCGCTTACCGTCGCTGTTTACGCGATCT TCCTCTTCGCCTTCTCCATCTTCCTGTTTGTGTTCAACACTGGCCGCATCTTGGATGACGATCCGGAATCCGTTCCTTTCTTCCCCCGTGAATCCTCCAT TTCCGACGAAGATTCACTCCCTGCATCTGACCAGGTGTCTGATCCAGCCGGCCTCTGGGATCATCCGGCTAGTCGTGGATTGCGCCCTTGCCTCAACCCC ACTGCTAAATACAAAGCTGCAGCTGAAGTACTGGATCGTTACTTAACAGTGAGGAGCAATGGCGGATTGAACCAAATGCGCACTGGTATTGCAGATATGG TGGCAGTTGCACGAATCATGAATGCAACTTTGGTTATTCCTCAACTGGACAAGCGTTCCTTTTGGCAAGATTCAAGTACATTTACCGATATCTTCGATGA GGTTCATTTCATCACAAGCCTAAAAGGTGACGTGAGGATTGTTAAAGAGCTCCCGAAAGACATGCAGACCATTCCTCATGCTAGGAAACACTTCACTTCA TGGTCAAGCATGGGCTATTATGAAGAAATGGCACATATATGGAATGACTTCCAGGTAGGAATAACTTGTTGGCTGAATCTGAGAATTTTGTACATACACA GTAGTGGAAAGATTTACCCCCCCTATGATGCTTTACGATTCACGCCTCCAATTGAAAGCTTTGGCAAGAAGCTGGTGGAGCGGCTGAGGTCACGCGGTGA GAAATTCATTGCTCTTCATCTAAGATACGAGAAGGACATGCTTTCTTTTACGGGGTGCACTTATGGACTGTCCAAAACTGAGTCAGAGGAGCTGCGGATC ATGAGGGAGAATACCAACCACTGGAAACTTAAGAAAATAAACTCCACCGAGCAAAGAATCGAAGGCTTGTGTCCTCTTACTCCAGGGGAGGTGGGCATTT TTCTTCAGGCTCTTGGTTATCCTCCATCAACTGTAATCTATATTGCAGCAGGAGAAATATATGGCGGTGAATCCCATCTCCAAGAGCTCCGGTCTCGCTT CCCAAACATTGTTTCCAAGGAAGCATTGGCAACGGAGGAGGAATTGAGGCCCTTTTCTAGTCATGGCTCTCAAACTGCAGCACTGGATTATATTATGTCT GTAGAAAGTGATATCTTTGTTCCTTCACACTCCGGTAACATGGCAAGAGTCGTTGAAGGCCACCGGAGATTTCTCGGCCATCGTAAGACCATCAACCCAG ACAGGAAAGGACTTGTGGAACTATTTGATAGGCTTGATAGAGGAGATGTGAAAGAAGAATCTTTACCAGTACTGGTGCAAGAGATGCATAAGAACAGGCA AGGAGGGCCAAGGAAAAGGAAAGGCGCAGCATCAGGGATCAAAGGGAGAGCACGTTTCAAGACAGAGGAGTCATTTTATCAGAACCCATATCCAGAATGC ATCTGCAAATCCAAATGA
AA sequence Show only first row Show all	>Lus10020882 pacid=23178020 polypeptide=Lus10020882 locus=Lus10020882.g ID=Lus10020882.BGIv1.0 annot-version=v1.0 MLNSKSNLHGRSSSSWLFRSRRLTPLTVAVYAIFLFAFSIFLFVFNTGRILDDDPESVPFFPRESSISDEDSLPASDQVSDPAGLWDHPASRGLRPCLNP TAKYKAAAEVLDRYLTVRSNGGLNQMRTGIADMVAVARIMNATLVIPQLDKRSFWQDSSTFTDIFDEVHFITSLKGDVRIVKELPKDMQTIPHARKHFTS WSSMGYYEEMAHIWNDFQVGITCWLNLRILYIHSSGKIYPPYDALRFTPPIESFGKKLVERLRSRGEKFIALHLRYEKDMLSFTGCTYGLSKTESEELRI MRENTNHWKLKKINSTEQRIEGLCPLTPGEVGIFLQALGYPPSTVIYIAAGEIYGGESHLQELRSRFPNIVSKEALATEEELRPFSSHGSQTAALDYIMS VESDIFVPSHSGNMARVVEGHRRFLGHRKTINPDRKGLVELFDRLDRGDVKEESLPVLVQEMHKNRQGGPRKRKGAASGIKGRARFKTEESFYQNPYPEC ICKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64600			O-fucosyltransferase family pr...		Lus10020882 [exp]	0	1
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	6.6	0.7369
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10033865 [exp]	6.9	0.7768
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	7.1	0.7419
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	8.4	0.8268
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10024952 [exp]	8.5	0.7879
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10038373 [exp]	9.5	0.7858
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10037870 [exp]	12.7	0.7922
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10003422 [exp]	20.3	0.7359
AT5G06970			Protein of unknown function (D...		Lus10026160 [exp]	22.1	0.7887
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	25.3	0.7629

Compare expression of checked genes

Lus10020882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.