Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18680 447 / 1e-158 Amino acid kinase family protein (.1) AT3G10030 248 / 6e-78 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033492 [exp] 543 / 0 AT3G18680 438 / 4e-155 Amino acid kinase family protein (.1) Lus10008988 [exp] 276 / 4e-89 AT3G10030 450 / 3e-154 aspartate/glutamate/uridylate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G057700 [exp] 477 / 2e-170 AT3G18680 467 / 1e-166 Amino acid kinase family protein (.1) Potri.010G233500 [exp] 274 / 6e-89 AT3G10030 434 / 3e-148 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.006G117300 [exp] 274 / 1e-88 AT3G10030 591 / 0.0 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.008G027000 [exp] 271 / 9e-88 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.007G110201 [exp] 70 / 3e-15 AT3G18680 76 / 2e-18 Amino acid kinase family protein (.1) Potri.007G110301 [exp] 0 / 1 AT3G18680 0 / 1 Amino acid kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10020884 pacid=23177932 polypeptide=Lus10020884 locus=Lus10020884.g ID=Lus10020884.BGIv1.0 annot-version=v1.0 ATGGCGGTCTCCTCCTCCGTTTCTCCCATCCCCTCCCTCAGTCTCACCACTTCCTCCTCCTCCTCTTCTTTCTCGTCTCCGTCCTTCTTCCAATTGAGCC CTCTCAAGCTTCCTCGCTTCAGCTCCATCATGCCTCGTAGCAGCTCAAGCCAGCGAATGGCGGTGCATTGCTCCTCTGACAGCGGACCAACTCCCTTCAG ACAGCCTCAAATGGCACCGACACTTCCAGCTAGGGTGGCCATGACTGAAAATGGGACGCCCAGACCTTACAAGTGGCAGAGGGTGTTGCTTAAAGTTAGC GGTGAAGCACTTGCGGGAGATCATATGCAAAACATTGACCCAAAGATCACGATGGCCATTGCACGGGAGGTTGCAGCTGTAACACGCCTTGGCATTGAGG TCGCAATAGTGGTAGGAGGGGGGAATATATTTCGTGGAGCCTCTTGGGCTGGAAGCAGTGGCCTTGACCGTTCTTCTGCTGACTACATTGGGATGCTGGC AACTGTGATGAATGCTATATATCTTCAAGCAACCATGGAGAGTATTGGCATCCCAACAAGAGTGCAGACTGCTTTTCGCATGTCTGAGGTTGCTGAGCCA TACATTCGTCGTAGAGCTGTACGACATTTGGAAAAGGGAAGGGTTGTTATATTTGCAGCAGGAACTGGGAATCCATTCTTTACAACAGACACAGCTGCTG CCTTGCGCTGTGCAGAAATAAATGCAGAGGTAGTGCTGAAAGCTACGAATGTCGACGGAGTATTTGATGATAATCCCAAGTATAACCCCAATGCCCGTCT CCTCGAGAATCTGACTTACCAGGAGGTGATTTCGAAAGATCTGTCTGTGATGGACATGACTGCCATTACACTCTGCCAAGAGAACAAAATCCCCGTTGTT GTGTTCAATCATTCGAAACCGGGCAACATCAGCAAAGCCATCAAAGGAGAAAGAGTTGGGACACTGATCGGAGCAGCCGAGAATTTGAAGGTTGATGGTG CATAA
AA sequence Show only first row Show all	>Lus10020884 pacid=23177932 polypeptide=Lus10020884 locus=Lus10020884.g ID=Lus10020884.BGIv1.0 annot-version=v1.0 MAVSSSVSPIPSLSLTTSSSSSSFSSPSFFQLSPLKLPRFSSIMPRSSSSQRMAVHCSSDSGPTPFRQPQMAPTLPARVAMTENGTPRPYKWQRVLLKVS GEALAGDHMQNIDPKITMAIAREVAAVTRLGIEVAIVVGGGNIFRGASWAGSSGLDRSSADYIGMLATVMNAIYLQATMESIGIPTRVQTAFRMSEVAEP YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVFDDNPKYNPNARLLENLTYQEVISKDLSVMDMTAITLCQENKIPVV VFNHSKPGNISKAIKGERVGTLIGAAENLKVDGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18680			Amino acid kinase family prote...		Lus10020884 [exp]	0	1
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10035543 [exp]	1.0	0.9667
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003577 [exp]	1.4	0.9649
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005030 [exp]	6.7	0.9310
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10022255 [exp]	6.9	0.9453
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10030194 [exp]	7.1	0.9429
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10024430 [exp]	7.9	0.9386
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10015165 [exp]	8.9	0.9278
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Lus10007262 [exp]	9.0	0.9454
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10025302 [exp]	10.7	0.9281
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10029044 [exp]	11.6	0.9015

Compare expression of checked genes

Lus10020884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.