Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63970 504 / 4e-179 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) AT3G01650 417 / 2e-143 RGLG1 RING domain ligase1 (.1) AT5G14420 412 / 2e-141 RGLG2 RING domain ligase2 (.1.2.3.4) AT1G67800 400 / 2e-137 Copine (Calcium-dependent phospholipid-binding protein) family AT1G79380 380 / 7e-130 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) AT5G61900 86 / 5e-18 CPN1, BON1 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) AT5G61910 86 / 8e-18 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT5G07300 86 / 1e-17 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) AT1G08860 82 / 2e-16 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022294 [exp] 409 / 1e-140 AT3G01650 608 / 0.0 RING domain ligase1 (.1) Lus10036879 [exp] 404 / 6e-138 AT3G01650 555 / 0.0 RING domain ligase1 (.1) Lus10011405 [exp] 397 / 4e-136 AT5G14420 566 / 0.0 RING domain ligase2 (.1.2.3.4) Lus10014587 [exp] 389 / 2e-133 AT3G01650 517 / 0.0 RING domain ligase1 (.1) Lus10006231 [exp] 388 / 5e-133 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10033491 [exp] 384 / 3e-132 AT5G14420 293 / 1e-97 RING domain ligase2 (.1.2.3.4) Lus10032097 [exp] 385 / 5e-131 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10006463 [exp] 379 / 7e-129 AT3G01650 547 / 0.0 RING domain ligase1 (.1) Lus10033043 [exp] 379 / 1e-128 AT3G01650 492 / 4e-172 RING domain ligase1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G065700 [exp] 530 / 0 AT5G63970 551 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Potri.007G103700 [exp] 486 / 3e-172 AT5G63970 524 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Potri.010G174800 [exp] 414 / 1e-142 AT1G79380 535 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.010G049600 [exp] 411 / 3e-141 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.008G183600 [exp] 411 / 4e-141 AT5G14420 571 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.012G090100 [exp] 410 / 4e-141 AT5G14420 575 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.006G002600 [exp] 407 / 1e-140 AT5G14420 521 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.001G342200 [exp] 407 / 5e-140 AT5G14420 572 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.016G003000 [exp] 400 / 1e-137 AT5G14420 500 / 2e-176 RING domain ligase2 (.1.2.3.4) Potri.008G081300 [exp] 399 / 2e-137 AT1G79380 518 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF07002 [flax] [poplar] Copine Copine
Representative CDS sequence Show only first row Show all	>Lus10020885 pacid=23177908 polypeptide=Lus10020885 locus=Lus10020885.g ID=Lus10020885.BGIv1.0 annot-version=v1.0 ATGAAGAATAGCTTCAGCCATTCACAGCGGCCCAATTTCATAGCTGACAATTTCAACTCTCTTGATCAGGTTATTTCTGCACTGAGAGAAGCAGGTCTTG AGTCATCAAACTTGATACTTGGCATTGACTTCACAAAGAGTAACGAGTGGTCAGGCAGGCATTCGTTTCATCGGAGGAGCCTACATGCAATCGGTAGTGT GACGAATCCTTACGAACAAGCGATCTCAATAATCGGACGGACTTTGTCTCCATTCGACGAAGATAATTTGATACCTTGTTTTGGATTTGGGGATGCATCA ACACGCGATAAACACGTCTTCAGCTTTTATCCTGACCATCGCCCTTGTCGTGGCTTCGAAGAGGCTCTTGCTCGATACAAAGAAATCGTTCCGTACTTAC AATTGGCAGGTCCAACTTCATTTGCTCCAATCATTGATGCAGCAATTGACATTGTGGAGAAGAGTAACGGTCAATATCATGTTCTTGTTATAGTTGCAGA TGGGCAGGTTACCAGGAGTCCAGCTATTCCGCGGGGGAGTTGTAGTCCGGAAGAACAAGCAACAGTAAATTCCATAGTTGCTGCAAGCCATTTTCCTCTC TCAATTGTTCTAGTTGGGGTCGGAGACGGGCCATGGGATGCAATGAAACAATTCGATGATAACATTCCGCACAGAGCATTCGACAATTTCCAGTTTGTAA ATTTCACAAAAATAATGTCTGAGAACAAGGAAACATCAAAGAAAGAAGCAGACTTTGCTCTTGCAGCACTCATGGAGATCCCTTGTCAATACAGAGCCAC TCAAAGCCTTGATGTTTCTAGAGGAACAATGAGTCATCAACCTACAAGGCCTCTTCCACCTCCCAAAGCAGTGATCGATCATGATAATGAAGTTAAGTCA ATTCCTCCATTGATCAATTCTGCAACAAGCGGAGTAACAGCTCGAGCTCCTGTTGAACCGGTCTGCCCCATATGCTGGACAAACCCTAAGAACATGGCAT TTGGATGTGGTCACACGTCCATCCACTGCGAACGAGGTGTAGCCGAGGTGGTAGTTCTGCCGGTTTTCGGCCTGGGGATCCCAGGTTTGAATCCCGGGGA GCAGCTCCTCACGTACTGCCCTCTTGTAGCACCTCCGTTATGCTTATATGTTTACCTTTCCCATGTCTATTGCGTGGCTCCTTCGGGGTTGAAGACATGC CAGGACTGCGGAGGATTGGTTTCGAGTTGCCCTTTGTGTCGGCAGCCCATAACAACGCGTATCAAACTCTTCAACTGA
AA sequence Show only first row Show all	>Lus10020885 pacid=23177908 polypeptide=Lus10020885 locus=Lus10020885.g ID=Lus10020885.BGIv1.0 annot-version=v1.0 MKNSFSHSQRPNFIADNFNSLDQVISALREAGLESSNLILGIDFTKSNEWSGRHSFHRRSLHAIGSVTNPYEQAISIIGRTLSPFDEDNLIPCFGFGDAS TRDKHVFSFYPDHRPCRGFEEALARYKEIVPYLQLAGPTSFAPIIDAAIDIVEKSNGQYHVLVIVADGQVTRSPAIPRGSCSPEEQATVNSIVAASHFPL SIVLVGVGDGPWDAMKQFDDNIPHRAFDNFQFVNFTKIMSENKETSKKEADFALAALMEIPCQYRATQSLDVSRGTMSHQPTRPLPPPKAVIDHDNEVKS IPPLINSATSGVTARAPVEPVCPICWTNPKNMAFGCGHTSIHCERGVAEVVVLPVFGLGIPGLNPGEQLLTYCPLVAPPLCLYVYLSHVYCVAPSGLKTC QDCGGLVSSCPLCRQPITTRIKLFN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63970			Copine (Calcium-dependent phos...		Lus10020885 [exp]	0	1
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	7.5	0.9498
AT3G47250			Plant protein of unknown funct...		Lus10020563 [exp]	8.4	0.9485
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10038219 [exp]	9.2	0.9411
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10016759 [exp]	12.0	0.9382
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	13.5	0.9378
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10005983 [exp]	13.7	0.9404
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	13.9	0.9445
AT5G23950			Calcium-dependent lipid-bindin...		Lus10027502 [exp]	16.2	0.9313
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10018348 [exp]	17.0	0.9419
AT3G47570			Leucine-rich repeat protein ki...		Lus10020140 [exp]	18.2	0.9400

Compare expression of checked genes

Lus10020885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.