Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57710 218 / 1e-58 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 171 / 1e-43 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT3G52490 150 / 3e-37 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 121 / 9e-28 Clp amino terminal domain-containing protein (.1) AT1G07200 116 / 3e-26 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G40130 109 / 9e-25 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G29970 109 / 5e-24 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G29920 94 / 2e-19 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT3G44480 79 / 1e-14 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 79 / 2e-14 disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019984 [exp] 222 / 4e-60 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 222 / 5e-60 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007455 [exp] 132 / 1e-31 AT3G44480 98 / 1e-20 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10029852 [exp] 129 / 3e-30 AT2G18750 252 / 1e-71 Calmodulin-binding protein (.1.2.3) Lus10021291 [exp] 118 / 7e-27 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041060 [exp] 118 / 1e-26 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10008970 [exp] 115 / 9e-26 AT3G52490 460 / 1e-147 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028849 [exp] 114 / 1e-25 AT3G52490 498 / 5e-165 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 113 / 2e-25 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097300 [exp] 238 / 2e-65 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 233 / 2e-63 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G017600 [exp] 150 / 6e-37 AT3G52490 635 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 149 / 2e-36 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.010G241600 [exp] 148 / 2e-36 AT3G52490 641 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G204500 [exp] 143 / 9e-35 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G073800 [exp] 142 / 2e-34 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G071800 [exp] 125 / 3e-29 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G069100 [exp] 120 / 2e-27 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G188200 [exp] 110 / 2e-24 AT1G07200 624 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10020886 pacid=23177935 polypeptide=Lus10020886 locus=Lus10020886.g ID=Lus10020886.BGIv1.0 annot-version=v1.0 ATGGAACGAGTTCCGGTATCGGAAGGAATGCTCACTTCCGGGGACAACGTCAAGGCAATCCTGCCATGCCTCGCGGAGGAGGGCGCCTATGTCCTGAAGC AATCCGCCGCAGAAGCGAGGCGGCGGAAGCACACGGTGACCACCCCGTTACACGTAGCCGCCGCCGTTCTGACTGATACGTCCGGCCTCTTGGATCGAGT TTGCGTCGGTTTGAAACCGAACGCATCCAAACAGCTCAACTGGACACGCCTGGAGCTAGTCTTCGACGCTGCTCTTGGAGAATTTATCTCCAGCAAGCTT CCTAAACTCGACCTTGACCCGCCAATTTCGAATTCGTTAAGAACGGTGTTGAGCCGCGCTCAAACTTGCCAGCGGCGGCGGCGACGACAGTCGACGGAAG CTGTGCGGATCGAGCTCGAGGAGTTAATTCTGGCCGTATTAGATGATCCGGGCGTGGTTAGGGTTTTATCGGAAGCTGGTTTCCGTACCGCGGCGATTAA GGCAATAATTCGGTGTTCTCTTGGTCCTTCTGCTAAACCAACAGCGGACTCCAACAAAGAAAGCTTGCAACTTGAGAAGGAAGACGCTGAAGCGGATCAA AGGATAGACAAGGAAGTCAACCGTGCAGTCAACGTTCTGTTGAGAGCCCGAAAGAGAAATCCGGTATTGATGGGTGAATCAGAGTCAGAATCAAGGATGG TTGTGAAGGAGCTTCTGAGGCGATTGGAGGCTAAAGAGATTGAGTTCGATATACTGAAGAACGTTCAGGTGCTTCATTTGGGAGAAGATCAGTTTCCCCA CAAAGGATCCTCGAGGATTCTGTATTTGGATCACATCATCAAGGCTTTGGGAGGAAACTTGTATCCCGATGGCGTGATCATCGATTTAGGCGATTTGAAA TGGCTTCTTGAGGACCAAGCAGCTGGGGGTGGTTCGGCAGAAGTTGAGACTCCCACCGTAGACATGATCGGGACGCGGCTGAGGTGGCTTCGAGCTGGGA TTTGCGGTACGATCTGGTTGATCGGTACTGCTAGTTGCGAAACGTATTCGAGGTGTCGAGCTTGTCATCCTGCAATTGAAGATGCATGGGATCTGCATGC TATCCTGCCGACTGGTTGTGGAACTGTTCGATCAGGACAACGTCACGATGACAGCAAGCTTGTCGCAACCCCGAAGAGAATCGAGAATGAACTAATTGTC GATGGCGGGTATGAGAAGGTTCAATGGATGTTCCTGGAGAAGAAGCGTATGGATAGAAACCAGATGTCGTCGAAGATGATGCATCTGCAAAAGGGGCCTA GGAGCAGATTTTCCAGTGAAGCCCGTGATCAACTAATGAGTTCTCTAAGGGAAACAAGCTCAGACAGATGGATCTCACCCGCCTCCTTTAACCTCTTTTT ACAAGATGGCTTGACAAGCCTACACACTCCTGAGTTCCCACCAAAAGCTTTGTCGTCTAATTGGTACTCTGCCCATAACCTTGTTCACCTTATCATGCAC CGCTGCACCAACTACAACACTGTTGGACAACTCCAAGATGGCAGGTTTTTCCAGCATCTCGTGAATCTAAAGCTGATGGATCTCCGTGACTCCAGTTTGA GCAGGCTGCCCGAAACTTCGGCGAGTCAGAAACTCGAGATACTGAATCTCTCCGGTTGCGTAAACTTGATAGACGTGTTGTCCATTCACCGGCTTTCTAA GCTGCAGGATGTCAATTTCAGAGGATGCATCCGTGTCAGGAGGCTTCCTAGTTTGTGTAACCTGAGACTGGTTAAAACTCTGGATCTCTCAAACTGCTCC AGACTCGACAAATTGCCTCCTTCCATAGGCCATCTCCGTGGTCTTGTTTCCTTGGATCTATCAAACTGCGTTAAGCTTGAGCAGCTTCCAGGAAGCATTT TCAAGTTGAAGTCGGTAGAAACCTTCAATATCTCTGGCTGTTCGACCCTTATGAAACGCTTTGCCGCCAGTGAAGAGCCGACAAGTGGCACTGGATCCAA GATGATTGTCGAGGAGTCCGGGATGCATTTGGAGAAGGAAAACCAAACCAGCTTGCAACCCTTTCATCCATATCTGGAATCCGAGGCCATGGAAATGGAG GCAACTGAGAGCCATCTCCCATCTGTTGTAACCATCTCCACATTTATTCATAGTGAAACAAAGAACAAGCTTGGAGTTGCTAAGAGCAGGAACTCCTTCA AGACTAGAGCGTCAGGAAAAGTTCTCATGGCGTCCCCTAAGGACTTCAGGGAGGCAGTACTTGCTCTCACCGGCATCGAAAACGATTCGAGATTCATCCC CAGCAGCAAACCAGCTTTCTACTCTACCTTAGTGGAGAATAAGAAGAAGACATTAAGAGGCTATTTGAGTATGTCATTGGAAGATATTAACCAGCAACAG AATGGGTTTCTGAATCTCGGGGCGATTGTCCACACGCTACTAATGAAACGTGGATCCAACATGTTCATCCTCGATGAACATATTGCACTAACTGGATTCA AGTATTCCTTGGCGGAGCTGAGCAAGAGGGTTCCTGGTGCAGTGATGAGCATGGAGAATGCAGAAGCTCAGAGAGCAGTACTTGTTGAGAAAAGCATGGA GCTTGGCGCGAAGTTGGTTCTGGGACAGCAGGAGTTGGCTTCGGTGGAATCTGAGTTCTGGAGGATTTCGTCGGAGGAGGAAGATGTAGAGGCTCAAATT CAGTGTTTGATTGCCAAGAAAAGGCAAATCAGGAATATTTGA
AA sequence Show only first row Show all	>Lus10020886 pacid=23177935 polypeptide=Lus10020886 locus=Lus10020886.g ID=Lus10020886.BGIv1.0 annot-version=v1.0 MERVPVSEGMLTSGDNVKAILPCLAEEGAYVLKQSAAEARRRKHTVTTPLHVAAAVLTDTSGLLDRVCVGLKPNASKQLNWTRLELVFDAALGEFISSKL PKLDLDPPISNSLRTVLSRAQTCQRRRRRQSTEAVRIELEELILAVLDDPGVVRVLSEAGFRTAAIKAIIRCSLGPSAKPTADSNKESLQLEKEDAEADQ RIDKEVNRAVNVLLRARKRNPVLMGESESESRMVVKELLRRLEAKEIEFDILKNVQVLHLGEDQFPHKGSSRILYLDHIIKALGGNLYPDGVIIDLGDLK WLLEDQAAGGGSAEVETPTVDMIGTRLRWLRAGICGTIWLIGTASCETYSRCRACHPAIEDAWDLHAILPTGCGTVRSGQRHDDSKLVATPKRIENELIV DGGYEKVQWMFLEKKRMDRNQMSSKMMHLQKGPRSRFSSEARDQLMSSLRETSSDRWISPASFNLFLQDGLTSLHTPEFPPKALSSNWYSAHNLVHLIMH RCTNYNTVGQLQDGRFFQHLVNLKLMDLRDSSLSRLPETSASQKLEILNLSGCVNLIDVLSIHRLSKLQDVNFRGCIRVRRLPSLCNLRLVKTLDLSNCS RLDKLPPSIGHLRGLVSLDLSNCVKLEQLPGSIFKLKSVETFNISGCSTLMKRFAASEEPTSGTGSKMIVEESGMHLEKENQTSLQPFHPYLESEAMEME ATESHLPSVVTISTFIHSETKNKLGVAKSRNSFKTRASGKVLMASPKDFREAVLALTGIENDSRFIPSSKPAFYSTLVENKKKTLRGYLSMSLEDINQQQ NGFLNLGAIVHTLLMKRGSNMFILDEHIALTGFKYSLAELSKRVPGAVMSMENAEAQRAVLVEKSMELGAKLVLGQQELASVESEFWRISSEEEDVEAQI QCLIAKKRQIRNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57710			Double Clp-N motif-containing ...		Lus10020886 [exp]	0	1
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	2.0	0.9117
AT3G57120			Protein kinase superfamily pro...		Lus10011517 [exp]	3.5	0.8809
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10038985 [exp]	3.5	0.8866
AT1G23850			unknown protein		Lus10030860 [exp]	7.7	0.8908
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10033041 [exp]	8.4	0.8616
					Lus10042751 [exp]	10.5	0.8594
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10027281 [exp]	11.0	0.7976
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031804 [exp]	12.6	0.8742
AT3G47570			Leucine-rich repeat protein ki...		Lus10040185 [exp]	13.6	0.8700
AT3G47110			Leucine-rich repeat protein ki...		Lus10040184 [exp]	16.1	0.8183

Compare expression of checked genes

Lus10020886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.