Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63840 1429 / 0 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) AT3G23640 300 / 3e-87 HGL1 heteroglycan glucosidase 1 (.1.2) AT5G11720 277 / 1e-79 Glycosyl hydrolases family 31 protein (.1) AT3G45940 262 / 2e-74 Glycosyl hydrolases family 31 protein (.1) AT1G68560 258 / 1e-72 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033490 [exp] 1849 / 0 AT5G63840 1444 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10038408 [exp] 280 / 2e-80 AT5G11720 1150 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10008067 [exp] 278 / 6e-79 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10034315 [exp] 256 / 6e-72 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035671 [exp] 250 / 1e-69 AT3G23640 1456 / 0.0 heteroglycan glucosidase 1 (.1.2) Lus10041457 [exp] 249 / 2e-69 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035019 [exp] 246 / 2e-68 AT1G68560 1195 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035020 [exp] 225 / 3e-61 AT1G68560 1238 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10000779 [exp] 114 / 6e-27 AT5G11720 473 / 1e-160 Glycosyl hydrolases family 31 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100000 [exp] 1449 / 0 AT5G63840 1427 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.005G069000 [exp] 1397 / 0 AT5G63840 1405 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.001G129600 [exp] 304 / 3e-88 AT3G23640 1463 / 0.0 heteroglycan glucosidase 1 (.1.2) Potri.011G154200 [exp] 294 / 1e-85 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154500 [exp] 288 / 1e-83 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154300 [exp] 287 / 4e-83 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.001G442800 [exp] 281 / 5e-81 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.010G125800 [exp] 253 / 6e-71 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.008G120000 [exp] 249 / 2e-69 AT1G68560 1465 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.006G039500 [exp] 83 / 5e-16 AT5G63840 74 / 3e-13 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01055 [flax] [poplar] Glyco_hydro_31 Glycosyl hydrolases family 31
Representative CDS sequence Show only first row Show all	>Lus10020887 pacid=23177966 polypeptide=Lus10020887 locus=Lus10020887.g ID=Lus10020887.BGIv1.0 annot-version=v1.0 ATGGCGTCCCAAATTGGCGGCCGCCATTCAGTTCTGATCTTTCTATTCCTTCTCTCCATCGTTTCCCAAACAGCACTCTCATGGAAGAAAGAAGAGTTCC GTAATTGTAATCAGACCCCTTTCTGCAAGCGTGCTCGCTCTCGCAACCCCGGCGCTTGTAACTTGATCGCCGATCAAGTTTCCATCTCCGAAGGTCGGCT CACTGCCAAGCTCATCCCGAGACCTATTCCCGATCAGGGGGATCAGATCTCCAAGCCTCTGCTTCTCTCGCTCTCGGTACACCAGAACGGGATCTTACGG TTGAAAATCGATGAGGAATCTTCGCTTGACCCGCCAAAATCTCGATTCCAAGTCCCCGACGTGGTAGTCCCCGAGTTTGAGGAGAGTATGCTATGGCTGT CTAGGGTTTCTACTGAGACTGTCGATGGCGATTCAGCTCTTTCCACTGTCGTCTATCTAGCGGACGGGTATGAGGCTGTTCTTCGACATGATCCGTTTGA GATTTACGTCCGAGAGAAGTCAGGTAAGCGCCGTTTGGTTTCTATGAACTCTCATCTGCTGTTTGATTTCGAGCAATTGAGGTCGAAAGATGAAGGGGAA GATTGGGAAGAGAGGTTCAAGAGTCATACAGATAGTAGACCTTACGGACCTCAGTCGATCAGTTTTGATGTGTCGTTTTATGATGCTGAAATTGTCTCCG GTCTACCGGAGCATGCTACTAGCGTAGCTCTCAAGCCTACTAAAGGTCCTGGAGTTGATGACTCAGAGCCTTACAGATTGTTTAACTTGGATGTTTTCGA GTACCTCCATGAGTCGCCTTTCGGTCTCTATGGTTCAATACCATTGATGATTGCTCATGGGAAGGGTGGGAAGAGTTCTGGATTCTTCTGGTTAAACGCT GGTGAGATGCAAATTGATGTATTGGGTGATGGCTGGAATGCTGATTCTGGGCTTTCCCTGCCTTCTGATCAGAAGAGAATCGATACACTCTGGATGAGTG AGGCAGGCATTGTAGATGCTTTCTTCTTTGTTGGACCAGGTCCTAAGGACGTTGTGAGCCAATACATTGCTGTCACGGGGAAACCAGCAATGCCACAGCA TTTCGCCACTGCTTATCATCAGTGTAGGTGGAATTACAGGGATGAGGAGGATGTCGACAATGTGGATGCCAAGTTCGACGAGCACGATATTCCCTATGAC GTTTTGTGGCTAGACATTGAGCACACTGATGGTAAGAGGTACATGACGTGGGATTCTGTTACGTTCCCGCATCCCGAGGAAATGCAAAAGAAGTTGGCAG CCAAAGGAAGGCACATGGTGACCATCGTTGATCCTCATATTAAGAGGGATGACAACTATTACATACATAAGGAGGCTACAGAGAAAGGATATTATGTGAA GGATTCTAGTGGGAAGGACTTTGATGGGTGGTGCTGGCCAGGTTCCTCATCTTACTTGGATGTGTTGAGCCCCGAGGTTAGAACGTGGTTTAGTAGCAAG TTTGCATTTGACAGCTACAAGGGTTCAACTCCTTCACTGTATATTTGGAATGATATGAATGAGCCTTCCGTGTTCAATGGTCCAGAGATTTCAATGCCAA GAGATGCTTTACATTTTGGGGGAGTGGAGCATCGGGAACTACACAACGCATATGGCTACTACTACCATATGGCAACATCAAATGGTCTTATCAAGCGTGG AGATGGGACCGACAGGCCCTTTGTTCTGTCAAGAGCATTCTTTGCTGGAACTCAGAGGTTTGGATCAGTCTGGACAGGGGACAACACTGCAGACTGGGAT CATTTGAGAGCGTCTGTACCAATGCTTTTGACCCTTGGTGCGGATGTCGGAGGGTTTTTCGGTAATCCGGAGCCGGAGTTATTAGTTCGTTGGTACCAAC TTGGTGCTTTCTATCCTTTCTTCAGGGCCCATGCTCATCAGGACACGAAAAGACGGGAGCCTTGGTTATTTGGAGACCATAATACGAAGCTCATTAGACA AGCTGTACATGTCCGTTACATGTTGCTTCCATATTTCTACACGTTGTTCCGAGAGGCCAACATGACCGGTACCCCCATTATGCGTCCTCTGTGGATGGAG TTCCCTTCTGATGAGTCCACCTTTAACAATGATGAAGCTTTCATGCTCGGAAGCAGCATCTTAGTCCAAGGAATTTACACAGAGCGAGCGAAACACGCGT CGGTTTATCTACCAGGCAAAGAACTCTGGTACGACCTTTTGAGCGGATCTCCGTACAAGGGTTCTCAAACTCACAAGCTAGTGGCTTTGGAGGACCGAAT TCCTGCATTCCAAAAGGCCGGGACGATCATACCCAGGAAAGATCGTTATCGTCGCAGCTCAACACAGATGGCTAATGATCCCTATACTTTGGTGATAGCC CTCAACAGTTCTCAAGCAGCTGAAGGCGAGCTCTACATCGACGACGGGAAGACCTTCGAGTTCCTTGAAGGAGCCTACATCCACCGCCGATTCGTGTTCT CAAACGGCAAGCTCTCATCTTTCGACTTGACTCATAACAAGAAGCCGCGATTCACATCCCAGACTGTCATCGAAAGAATCATACTGCTGGGATACTCTCC CGGACCTAAGAGTGCCCTGATCAAGCCAGGGAATGGTAAAGCCGAAGTCGGTCTAGGGCCACTCGTACTTGAAGAGGGGATTCGATCTTCGTCCTCGTCG GTTGTAACCATCCGGAAGCCGAACCTCCCAGTGGACAAGGACTGGAGTGTAGAACTTGTGTGA
AA sequence Show only first row Show all	>Lus10020887 pacid=23177966 polypeptide=Lus10020887 locus=Lus10020887.g ID=Lus10020887.BGIv1.0 annot-version=v1.0 MASQIGGRHSVLIFLFLLSIVSQTALSWKKEEFRNCNQTPFCKRARSRNPGACNLIADQVSISEGRLTAKLIPRPIPDQGDQISKPLLLSLSVHQNGILR LKIDEESSLDPPKSRFQVPDVVVPEFEESMLWLSRVSTETVDGDSALSTVVYLADGYEAVLRHDPFEIYVREKSGKRRLVSMNSHLLFDFEQLRSKDEGE DWEERFKSHTDSRPYGPQSISFDVSFYDAEIVSGLPEHATSVALKPTKGPGVDDSEPYRLFNLDVFEYLHESPFGLYGSIPLMIAHGKGGKSSGFFWLNA GEMQIDVLGDGWNADSGLSLPSDQKRIDTLWMSEAGIVDAFFFVGPGPKDVVSQYIAVTGKPAMPQHFATAYHQCRWNYRDEEDVDNVDAKFDEHDIPYD VLWLDIEHTDGKRYMTWDSVTFPHPEEMQKKLAAKGRHMVTIVDPHIKRDDNYYIHKEATEKGYYVKDSSGKDFDGWCWPGSSSYLDVLSPEVRTWFSSK FAFDSYKGSTPSLYIWNDMNEPSVFNGPEISMPRDALHFGGVEHRELHNAYGYYYHMATSNGLIKRGDGTDRPFVLSRAFFAGTQRFGSVWTGDNTADWD HLRASVPMLLTLGADVGGFFGNPEPELLVRWYQLGAFYPFFRAHAHQDTKRREPWLFGDHNTKLIRQAVHVRYMLLPYFYTLFREANMTGTPIMRPLWME FPSDESTFNNDEAFMLGSSILVQGIYTERAKHASVYLPGKELWYDLLSGSPYKGSQTHKLVALEDRIPAFQKAGTIIPRKDRYRRSSTQMANDPYTLVIA LNSSQAAEGELYIDDGKTFEFLEGAYIHRRFVFSNGKLSSFDLTHNKKPRFTSQTVIERIILLGYSPGPKSALIKPGNGKAEVGLGPLVLEEGIRSSSSS VVTIRKPNLPVDKDWSVELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	0	1
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	1.0	0.9644
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002012 [exp]	2.2	0.9503
AT1G34130		STT3B	staurosporin and temperature s...		Lus10041985 [exp]	2.8	0.9517
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10022911 [exp]	3.5	0.9513
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	4.7	0.9439
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	4.9	0.9505
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10012697 [exp]	4.9	0.9402
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010923 [exp]	5.5	0.9445
AT3G24480			Leucine-rich repeat (LRR) fami...		Lus10017727 [exp]	6.2	0.9393
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10026663 [exp]	7.7	0.9199

Compare expression of checked genes

Lus10020887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.