Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64630 561 / 0 MUB3.9, NFB1, NFB01, MUB3, FAS2 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT5G09760 330 / 1e-104 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G64640 328 / 2e-103 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 208 / 8e-59 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 208 / 1e-57 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10720 204 / 6e-57 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT5G04970 202 / 3e-56 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 202 / 5e-56 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 199 / 7e-56 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 199 / 1e-55 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033489 [exp] 724 / 0 AT5G64630 612 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10033486 [exp] 489 / 3e-166 AT5G09760 597 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10005587 [exp] 347 / 1e-110 AT5G09760 689 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 214 / 2e-61 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 202 / 1e-57 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028882 [exp] 205 / 2e-57 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 204 / 2e-57 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013721 [exp] 194 / 2e-57 AT5G09760 278 / 3e-91 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 201 / 4e-56 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G108200 [exp] 581 / 0 AT5G64630 667 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.007G107300 [exp] 362 / 2e-116 AT5G09760 690 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G061500 [exp] 347 / 5e-111 AT5G09760 717 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 214 / 2e-61 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 210 / 1e-59 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.012G126800 [exp] 208 / 4e-59 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022700 [exp] 206 / 2e-58 AT3G05620 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 206 / 3e-58 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 204 / 4e-57 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.002G202600 [exp] 203 / 4e-57 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10020888 pacid=23177940 polypeptide=Lus10020888 locus=Lus10020888.g ID=Lus10020888.BGIv1.0 annot-version=v1.0 ATGAAAGGAGGTACAGTTCAAATCAACTGGCACGACATGAAGCCAGTCCTGTCAGTCGACTTTCATTCGATCTCCGGCCTCCTCGCTACCGGCGGCGCCG ATTACGACATCAAGCTCTGGTTGATAAGTCCAGCAGAACCAGAGAAGAAAACCCCAACTGCTACTTACCAGAATAGCCTTTCGTATCATGGCTCGGCTGT CAATGTCCTTCGCTTCTCTCCATGTGGTGAACTGCTTGCTTCTGGTGCTGATGGAGGTGAGCTGATCATATGGAAATCACAAGCGACGGAGTCTGGGAGA GCCTCAGTGTGGAAAGTTCTCAAGAATCTAACGTTTCACCGCAAGGATGTCCTAGATATGGAGTGGTCTGGTGACTCTGCATTTCTGATATCTGGGTCAG TTGATAACTCATGTATCATATGGGACATCAACAAAGGCTGTGTGCATCAGATGTTGGATGGCCATCTACATTATGTTCAAGGCGTTGCATGGGATCCTCT GGGGAAGTATGTTGCATCTCTTAGCTCTGACAGAACGTGCAGAGTTTACGCCAGAAAAACACAGCCAAAATCAAAAGGACTTGAAAAACCTTACGTTTGC CAACATGTAATCACAAAAGCTGAACAGCAGGCAAAGGATGATTCCAAGTCTACAAAAACCCATCTTTTTCTCGACGAAACTTTGGCTTCTTTCTTCCGAA GATTAGCCTGGTCCCCTGATGGGTCGTTCTTAGTCGCACCAGCAGGTTCTTACAAAATATCTCCTTCATCAGAAACGTTGAACACAGCTTATGTATTTTC CCGAAAGGATCTACCTGCATTAATGCTACCTGGAGCTTCTAAACCGGTTATAGCCGTGCGGTTTTGTCCTGTGCAGTTTACCCTCAGGGGAACAAATTCA GGTACTAACATCCTCCGGTGGTTGCCTATTCCTCATTACTATGAACAGAGAAAAAAAGAAGATCTCAAGGCTAATTATCATCCAATCCTGAACTATGCAG CTGGGCTCTTCAAGCTTCCTTATCGCCTGATTTTCGCCGTGGCTACTCTAAATTCAGTATACATATACGATACCGAAAGTGTTCCTCCGATAGCAGTTCT TGCGGGACTTCACTATGCTGCAATCACAGACATTGCATGGTCAGCTAATGGAGAGCTCTTAGCAGTGTCGTCTCAAGATGGCTACTGCACCTTAGGTAGA TATACCAAGATCCAAGAAGCTGTTGATGCTGCTCCGAGCAATCTGGTGGAGAAGAGGTTTGTGATTCATATAAAAGATGGGGTGTACGAGGAGATTGTTA GGATCCCATTTGAGAAGAAGAATGTTGTGTTCTTGGGTGATGGCATGGGTATAACCGTCATTACTGGAAATTTAGCTGTTGGTCATCAGCCTGGAGTCAC AACATATGACTCTGCCACTGTTGGGACAATATGGAGATTTCAAACCCCATTAAACTGTTCTGGGAGATGGGTTCATGGCAACAAACCTGACAATACAAAA CACAGCGACCTCTCGATGCTCGAAAACTGCGAATTCCTCGGCAACCAAGACACCTTATACGCGCATTCCCTCCGACAGTACTACAAATCGTGCCGAATCA CAGGAAACGTAGACTTCATCTTCGGAAACGCAGCCGCCGTGTTCCTGGACTGCCTCATCCAGCTCGTCCCTTTGCTGGACAAGCCCGAGAGCGGGGGCCA GCTTGCGATAACAGCGCAGGGAAGAACCGATCCGGCACAGTCGACAGGGTTCGTGTTCCTGGCGCTTTTCGACAAGGAACCTAGCGTGCACAAGAAATAC TTGGGGAGGGCGTGGAAGGAATACTCGAGAGCAGTGTTTATTAACTGTGAAATGGGGAGTGTGGTGTCGGAAGAAGGGTGGGTGCCATGGAATGGTGAGT ATGGGTTGAACACTCTTTACTATGGCGAGTTTGGTAACCATGGAGATGGGTGTGACAGAGGGAAAAGAGTGAAGTGGAGCTCTCAGGTTCCTGAAGAACA TCTGGATTCTTACTCTTTGCAGAGTTTCATTCAAGGGTTCAATTTTAAAGCTATTAAATTCTCAACCAGTCAACACAAAATTGCTACTTTGTAA
AA sequence Show only first row Show all	>Lus10020888 pacid=23177940 polypeptide=Lus10020888 locus=Lus10020888.g ID=Lus10020888.BGIv1.0 annot-version=v1.0 MKGGTVQINWHDMKPVLSVDFHSISGLLATGGADYDIKLWLISPAEPEKKTPTATYQNSLSYHGSAVNVLRFSPCGELLASGADGGELIIWKSQATESGR ASVWKVLKNLTFHRKDVLDMEWSGDSAFLISGSVDNSCIIWDINKGCVHQMLDGHLHYVQGVAWDPLGKYVASLSSDRTCRVYARKTQPKSKGLEKPYVC QHVITKAEQQAKDDSKSTKTHLFLDETLASFFRRLAWSPDGSFLVAPAGSYKISPSSETLNTAYVFSRKDLPALMLPGASKPVIAVRFCPVQFTLRGTNS GTNILRWLPIPHYYEQRKKEDLKANYHPILNYAAGLFKLPYRLIFAVATLNSVYIYDTESVPPIAVLAGLHYAAITDIAWSANGELLAVSSQDGYCTLGR YTKIQEAVDAAPSNLVEKRFVIHIKDGVYEEIVRIPFEKKNVVFLGDGMGITVITGNLAVGHQPGVTTYDSATVGTIWRFQTPLNCSGRWVHGNKPDNTK HSDLSMLENCEFLGNQDTLYAHSLRQYYKSCRITGNVDFIFGNAAAVFLDCLIQLVPLLDKPESGGQLAITAQGRTDPAQSTGFVFLALFDKEPSVHKKY LGRAWKEYSRAVFINCEMGSVVSEEGWVPWNGEYGLNTLYYGEFGNHGDGCDRGKRVKWSSQVPEEHLDSYSLQSFIQGFNFKAIKFSTSQHKIATL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10020888 [exp]	0	1
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012906 [exp]	2.8	0.8762
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10026361 [exp]	3.9	0.8896
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10009315 [exp]	4.2	0.8627
AT3G18630		ATUNG	uracil dna glycosylase (.1)		Lus10012898 [exp]	11.1	0.8819
AT2G34040			Apoptosis inhibitory protein 5...		Lus10013953 [exp]	16.0	0.8458
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	16.5	0.8848
AT4G21530		APC4	anaphase promoting complex 4, ...		Lus10018436 [exp]	18.3	0.8455
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10023814 [exp]	25.3	0.8621
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10042967 [exp]	25.3	0.8646
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10017669 [exp]	25.3	0.8706

Compare expression of checked genes

Lus10020888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.