Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18640 155 / 6e-39 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G26850 87 / 2e-18 histone-lysine N-methyltransferases (.1.2) AT2G33835 81 / 2e-15 C3HZnF FES1 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033487 [exp] 582 / 0 AT3G18640 176 / 6e-46 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10002082 [exp] 311 / 8e-93 AT3G26850 214 / 1e-59 histone-lysine N-methyltransferases (.1.2) Lus10003846 [exp] 284 / 9e-84 AT3G18640 192 / 4e-52 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10015319 [exp] 84 / 4e-16 AT2G33835 128 / 7e-31 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10025447 [exp] 82 / 1e-15 AT2G33835 140 / 1e-34 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10027498 [exp] 52 / 3e-06 AT5G52430 348 / 2e-113 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107800 [exp] 346 / 4e-105 AT3G18640 142 / 8e-35 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G061100 [exp] 306 / 4e-90 AT3G18640 140 / 2e-34 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.011G056600 [exp] 94 / 2e-19 AT2G33835 151 / 2e-38 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.018G051900 [exp] 92 / 8e-19 AT3G26850 168 / 4e-47 histone-lysine N-methyltransferases (.1.2) Potri.006G227200 [exp] 87 / 2e-17 AT3G26850 158 / 2e-43 histone-lysine N-methyltransferases (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020889 pacid=23178012 polypeptide=Lus10020889 locus=Lus10020889.g ID=Lus10020889.BGIv1.0 annot-version=v1.0 ATGAGTAGTAGTGCTGGTCGAAAGCGGAGTTCTAAGTGGGATTTGGGGGACGAATCCCGAAATTCCTTTGAGAATCAACAGAACAATGGGAAAGCAGGTT TAAGTTATCACGAGACTGACGATGGTAACCGAAGCAGGTGGTCAACTATGGACAGAAGAGGCTCGCTAGGAGATCATAGAATGATTGATGATGAATATGG CAGAACCTCTGGATGGGAAAGAGATGAAGATTACGGGCCGAGAATGTCCCCTGGCCTTGAAGAATGGAGACATAGAAGTCGGCGCCACTCTCCTAGTAAA GAATGGAAAAGACCTAGAAGAAGCAGGACCAGAAGCCAGAGTCGCAGCAGAAGCAGGAGCCCGGGGCACTCCTTAAGACGAGATTCATCGACTTCGGATA GAATTAGAAATAGATCGGGTGTATCAGCTGAGTTATGCAAACAGTTTGTTGCTGGGCGATGCAGGAGGGGAAGTCACTGTCACTTTCTTCACGAAAGTGC TCCGAGTTATGAGGATAACTGGGATGGACGTGGGAAATCTCTACCTTCTAGATATTCTGATGTACCTGCTAAAGGGCCAACCAATGATTTTGTCAGGGAA AGAGATATTGATAGACGACACAGAGATCCTTCTCCAGATAGGCCTAACGAGCCAATTCGTAGAGCAATTGAAACTCCCTGCAGATACTTTGCTGCCGGTA ACTGTAGGAATGCAACCAGTTGCAGATTTTCTCATCAAGCTCAGGATGATAATACCAGTCCTGAGAGGAGGCCACGTAACGAAAGGCGGTTAATGGACCA AAATATGGATAATCGGGACAAAATGTGGGATGGCCCGAAATGGAGAGATGTGGATAATTATTCGGAAGCATCAAAGTCAACTAGGGATGTTGAGAAACAA TGGAATGGTGATAAATATAGTAATCTGAATAATAATTCAGATTCTGCAAAACTGATTGATGACCGGAGTCGTAAAACTGGCTGGTCTGTGGATAATTCAC GTGTTCAAAGCTTGGCTGGAAGAACAACGCTAAAGCAGCATCAGTCACCAACTAATTTGGGATTAAATGCTTTGCCCCATCTTCCAACCATGAACTCTGT TGAGCAAAGTCGAGTAGGAAATGCACATGAACATGATCGCTTAAGAGGAGTAACTGGAACAAGCCCTATGAGCCCAAAGCCGTTGAATATAGGACAAGGT ACTGGCGATAGAAGCAATATTGCTGTCAATTCCAGCACTCCGTTCGCTCAGAATATCGTCAGTGGTGAACAACTCGCTACGCTTACTCCGTTCACTCAGA ATATCGTCAGTGGTGAACAACTCGCTACGCTTACTCCGTTCACTCAGAATATCGTCAGTGGTGAACAACTCGCTACGCTTACTCCGTTCACTCAGAATAT CGTCAGTGGTGAACAACTCGCTACGCTTACTCCGTTCACTCAGAATATCGTCAGTGGTGAACAACTCGCTACGCTTACTCCGTTCACTCAGAATATCGTC AGTGGTGAACAACTCGCTACGCTTACTCCGTTCACTCAGAATATCGTCAGTGGTGAACAACTCGCTACGCTTACTCCGTTCACTCAGAATATCGTCAGTG GTGAACAACTCGCTACGCTTACTCCGTTCACTCAGAATATCGTCAGTGGTGAACAACTCGCTACGCTTACTCCGTTCACTCAGAATATCGTCAGTGGTGA ACAACTCGCTACGCTTACTCCGTTCACTCAGAATATCGTCAGTGGTGAACAACTCGCTACGCTTACTCCGTTCACTCAGAATATCGTCAGTGGTGAACAA CTCGCTACGCTTACTCCGTTCACTCAGAATATCGTCAGTGGTGAACAACTCGCTACGCTTACCAATCTTTCAGTTTCTCTAGCTCAACTACTTGCCAATG GACATCAGCTTCCCCAACTTTATGCTGCTCACAGTTCTAATCCGGCCAGTGATCATGTTAAGCAATATGATCCCATATGTGACAGTATTGAACCTGGAAA TCAAGGCGTTGGCAATAAGCTTAGCGACCAAAAGGAGAAGAGCACTGGAGATCACGGGGAGGCACCGATGGCTGCACCGAATGGTAGTAATGATAAGAGT GGAAAGTCGAATGAACTCAAACCTGGTGCAGAATCTGGAATCATCGAGGATAACAGTGGGAAGAAAGCCAAAGATTCCGGTAAAGTGAAAGAGAGCAAAG CCGGAGAAGAAAACATCGATGCAGATGACGAGGAGGACAAGAAAAGCAAGGAAGCAAAGGGAAGTCGAGCATTCAAGTTTGCGCTTGTGGAGTTTGTAAA GGAAGCTTTGAAGCCGGCATGGAAGGAAGGGCAAGTGAGCAAAGATTCTTACAAGAACATAGTGAAGAAGGTTGTTGACAAAGTGACTGGTTCAGTGCAG GTGGCCAACATACCCCAAACGCAAGAAAAGATTGAACAATATGTGTCGGTTTCAAAGCCGAAAATGAATAAACTCGTGCAGGCTTATGTGGAAAAATTCC AGAAGGACCTGCGTCTTGACGAGCAGAAGTGTGCGGTGCTCTGGCTTCAAGGGTGCAATTCTGGAGTTCCTCTAGCAGCAAGCAGCTTGCAGTCCCACCG AAATGTCCTCAAAGACCTTCATGCTGCCAACCACTCTAGAAACCCCCCTCCGGCGATGTCTTCAACCTTGAAACACAGTACAAAATACAGAAAAACAACA GATAGACCTCAAACAGATCGAGGGAACCAAAACAAACAATTCTTTTGA
AA sequence Show only first row Show all	>Lus10020889 pacid=23178012 polypeptide=Lus10020889 locus=Lus10020889.g ID=Lus10020889.BGIv1.0 annot-version=v1.0 MSSSAGRKRSSKWDLGDESRNSFENQQNNGKAGLSYHETDDGNRSRWSTMDRRGSLGDHRMIDDEYGRTSGWERDEDYGPRMSPGLEEWRHRSRRHSPSK EWKRPRRSRTRSQSRSRSRSPGHSLRRDSSTSDRIRNRSGVSAELCKQFVAGRCRRGSHCHFLHESAPSYEDNWDGRGKSLPSRYSDVPAKGPTNDFVRE RDIDRRHRDPSPDRPNEPIRRAIETPCRYFAAGNCRNATSCRFSHQAQDDNTSPERRPRNERRLMDQNMDNRDKMWDGPKWRDVDNYSEASKSTRDVEKQ WNGDKYSNLNNNSDSAKLIDDRSRKTGWSVDNSRVQSLAGRTTLKQHQSPTNLGLNALPHLPTMNSVEQSRVGNAHEHDRLRGVTGTSPMSPKPLNIGQG TGDRSNIAVNSSTPFAQNIVSGEQLATLTPFTQNIVSGEQLATLTPFTQNIVSGEQLATLTPFTQNIVSGEQLATLTPFTQNIVSGEQLATLTPFTQNIV SGEQLATLTPFTQNIVSGEQLATLTPFTQNIVSGEQLATLTPFTQNIVSGEQLATLTPFTQNIVSGEQLATLTPFTQNIVSGEQLATLTPFTQNIVSGEQ LATLTPFTQNIVSGEQLATLTNLSVSLAQLLANGHQLPQLYAAHSSNPASDHVKQYDPICDSIEPGNQGVGNKLSDQKEKSTGDHGEAPMAAPNGSNDKS GKSNELKPGAESGIIEDNSGKKAKDSGKVKESKAGEENIDADDEEDKKSKEAKGSRAFKFALVEFVKEALKPAWKEGQVSKDSYKNIVKKVVDKVTGSVQ VANIPQTQEKIEQYVSVSKPKMNKLVQAYVEKFQKDLRLDEQKCAVLWLQGCNSGVPLAASSLQSHRNVLKDLHAANHSRNPPPAMSSTLKHSTKYRKTT DRPQTDRGNQNKQFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10020889 [exp]	0	1
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	1.4	0.8821
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032871 [exp]	2.2	0.8513
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Lus10014546 [exp]	2.4	0.8710
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	5.7	0.8396
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	6.0	0.8574
AT5G20170			RNA polymerase II transcriptio...		Lus10043284 [exp]	7.1	0.8356
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019393 [exp]	7.7	0.8451
AT5G41770			crooked neck protein, putative...		Lus10034294 [exp]	8.5	0.8102
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10038425 [exp]	9.6	0.8664
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	12.4	0.8350

Compare expression of checked genes

Lus10020889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.