Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18660 818 / 0 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT1G77130 735 / 0 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT4G33330 489 / 7e-167 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT1G08990 428 / 2e-143 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT1G54940 424 / 4e-142 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT5G18480 128 / 3e-31 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT1G09350 83 / 4e-17 ATGOLS3 galactinol synthase 3 (.1) AT1G60470 83 / 6e-17 ATGOLS4 galactinol synthase 4 (.1) AT4G26250 79 / 1e-15 ATGOLS6 galactinol synthase 6 (.1) AT1G56600 78 / 2e-15 ATGOLS2 galactinol synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033485 [exp] 883 / 0 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10018922 [exp] 755 / 0 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10028623 [exp] 742 / 0 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10021731 [exp] 523 / 1e-179 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10042658 [exp] 517 / 2e-177 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10031507 [exp] 403 / 2e-133 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10029932 [exp] 399 / 9e-132 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10027949 [exp] 120 / 1e-28 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 110 / 2e-27 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G061600 [exp] 901 / 0 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.007G107200 [exp] 899 / 0 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G187900 [exp] 757 / 0 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.014G029900 [exp] 528 / 0 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.013G022900 [exp] 416 / 2e-138 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.005G033500 [exp] 412 / 3e-137 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.013G049100 [exp] 120 / 1e-28 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.010G150400 [exp] 78 / 2e-15 AT2G47180 519 / 0.0 galactinol synthase 1 (.1) Potri.008G101000 [exp] 76 / 7e-15 AT2G47180 507 / 0.0 galactinol synthase 1 (.1) Potri.008G189400 [exp] 76 / 1e-14 AT1G60470 545 / 0.0 galactinol synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10020890 pacid=23178003 polypeptide=Lus10020890 locus=Lus10020890.g ID=Lus10020890.BGIv1.0 annot-version=v1.0 ATGAGATCATCAGGCTCTCGCTTACCAGCATCAATGAAGCTTCTGCAGAGAAGCAAAATCAAAGGTGCCGCCATCTTCCAGGAGAAGGATAATAAAGCTG CTACCAGCTGCTTCAGATTTGCTTCCTTCGTCAAGTTCTGTGCTGTGGTGATCATCTTCTGCACCATTGTCACTTTTGTTTCCTTCCCTGAAGCTGACCC TCTCTCTTCCACTCCTGCTCACAGATGGATATGGGGAGGAGAAGATCCAAGATACTCAACAAACTTAGAACCGATCAACTGGAACGACGTCTTTAATGCC GTCCACAGACTAGGCAAACTCAACCAACACAAAGCTATCGGACTGCTAAACTTCAACGACGCAGAACTCAACCATTGGCAAACCAAAATCTCACCTGAAG CAACCCACATTGCTCTCCACCTCAACAGACCCGCCGACCAGAACACCACCTGGGATTCCCTCTACCCGGAATGGATCGACGAGGAGCAAGAGACCGAGGT CCCCGTCTGCCCATCCCTGCCGAAAATCGAGCCCCCTCGAAAACGGCTCGACCTCATTGTGGTCAAGCTCCCTTGCAGGAACGAGGCCAATTGGTCTAGG GACGTTGCTAGGTTGCATTTGCAGCTTTCTGCAGCAAACCTTGCTGTTTTATCCGCTAAGGGGTCTTACCCTGCTGTGCATTTCCTGTTCATTACCAAGT GCTTCCCTTTGCCAAATCTCTTCACTTGCAGAGAGCTTGTTGTTAGGGAAGGGAATGCTTGGCTTTATAAGCCTGACTTGGATGTTTTGGCTCATAAGCT CCAACTCCCTGTTGGCTCCTGTGAACTTGCTCTTCCCTTCATTAACAACAAAGAGCAAGGAGGGGGGTATGGAGGGAATCCAAGGAGAGAAGCTTACGCG ACGATTCTTCACTCTGCCGACGTCTACGTCTGCGGAGCCATTGCAGCAGCTCAGAGCATCCGAATGTCAGGTTCAACCAGAGACATGGTCATTCTGGTAG ACGAGACCATCAGCGTTTACCACAGAAGTGGGTTGGAAGCGGCCGGGTGGAAGATCCGAACAGTGCAGAGGATCCGGAACCCCAAGGCGGAGAAAGATGC CTACAACGAATGGAACTACAGCAAGTTCCGGTTGTGGCAGCTGACGGACTACGACAAAATAATCTTCATCGACGCCGACCTCCTCATCCTCCGCAACATC GATTTCTTATTCGGGATGCCGGAGATCTCCGCCACGGGGAACAACGGCACTCTGTTCAACTCGGGAGTCATGGTGATCCAGCCTTCCAACTGCACGTTCA AGCTCCTGATGGATCACATCAACGAGATTCAGTCCTATAACGGCGGAGATCAAGGTTACCTGAACGAAGTCTTCACATGGTGGCATAGAGTTCCGAAGCA TTTGAACTTTCTGAAGAACTTCTGGATCGGAGACGACGAGGAAGTGAAGAGGAAGAAATCGGAGCTATTCGGGGCGGATCCTCCAATCCTGTACGTGCTT CATTACTTAGGGATGAAGCCGTGGCTGTGCTTTAGGGATTACGACTGCAATTGGAACTCGGAGATATTCAGGGAGTTCGCCAGCGACGTGGCGCACGCGC GGTGGTGGAGAGTCCACGACGCGATGCCGGAGGAGCTGCAGCAGTTCTGCTTGCTGAAGTCGAAGCAGAAGGCGCAGCTTGAGTGGGACAGGCGGGAGGC GGAGAAGGGGAATTTCTCCGACGGACATTGGAAAATTAGGGTTAGGGATTGGAGGCTGAGCAAGTGTGTGGATAATGTGTGTAATTGGAAGGGGATGTTG AGGCATTGGGGGGAGGGTAATTGGACTGACGTCGAAGAGCTTCTCAATCCCACACCGCCGGCCATCAAAGTTTCCTCTTCTTCTCTTGCCGGATTGTGA
AA sequence Show only first row Show all	>Lus10020890 pacid=23178003 polypeptide=Lus10020890 locus=Lus10020890.g ID=Lus10020890.BGIv1.0 annot-version=v1.0 MRSSGSRLPASMKLLQRSKIKGAAIFQEKDNKAATSCFRFASFVKFCAVVIIFCTIVTFVSFPEADPLSSTPAHRWIWGGEDPRYSTNLEPINWNDVFNA VHRLGKLNQHKAIGLLNFNDAELNHWQTKISPEATHIALHLNRPADQNTTWDSLYPEWIDEEQETEVPVCPSLPKIEPPRKRLDLIVVKLPCRNEANWSR DVARLHLQLSAANLAVLSAKGSYPAVHFLFITKCFPLPNLFTCRELVVREGNAWLYKPDLDVLAHKLQLPVGSCELALPFINNKEQGGGYGGNPRREAYA TILHSADVYVCGAIAAAQSIRMSGSTRDMVILVDETISVYHRSGLEAAGWKIRTVQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNI DFLFGMPEISATGNNGTLFNSGVMVIQPSNCTFKLLMDHINEIQSYNGGDQGYLNEVFTWWHRVPKHLNFLKNFWIGDDEEVKRKKSELFGADPPILYVL HYLGMKPWLCFRDYDCNWNSEIFREFASDVAHARWWRVHDAMPEELQQFCLLKSKQKAQLEWDRREAEKGNFSDGHWKIRVRDWRLSKCVDNVCNWKGML RHWGEGNWTDVEELLNPTPPAIKVSSSSLAGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10020890 [exp]	0	1
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	1.0	0.9950
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10033485 [exp]	1.4	0.9922
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10036433 [exp]	3.0	0.9871
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10041106 [exp]	3.5	0.9851
AT1G47530			MATE efflux family protein (.1...		Lus10042343 [exp]	3.7	0.9806
AT3G51325			RING/U-box superfamily protein...		Lus10018292 [exp]	5.0	0.9836
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	6.9	0.9832
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	7.5	0.9822
AT3G42950			Pectin lyase-like superfamily ...		Lus10027646 [exp]	8.4	0.9818
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008226 [exp]	8.5	0.9781

Compare expression of checked genes

Lus10020890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.