Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13690 421 / 1e-141 PRLI-interacting factor, putative (.1) AT5G60050 198 / 1e-56 BTB/POZ domain-containing protein (.1) AT1G63850 192 / 3e-54 BTB/POZ domain-containing protein (.1) AT3G50780 173 / 2e-47 unknown protein AT4G10800 44 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033484 [exp] 988 / 0 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10017511 [exp] 206 / 4e-58 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 200 / 2e-56 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 194 / 4e-55 AT3G50780 602 / 0.0 unknown protein Lus10028772 [exp] 196 / 2e-54 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 188 / 1e-52 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 179 / 2e-49 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10016789 [exp] 158 / 1e-43 AT3G50780 408 / 1e-140 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G058700 [exp] 546 / 0 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.007G109300 [exp] 531 / 0 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.007G032800 [exp] 203 / 3e-58 AT3G50780 654 / 0.0 unknown protein Potri.005G129700 [exp] 201 / 1e-57 AT3G50780 623 / 0.0 unknown protein Potri.001G100900 [exp] 201 / 1e-56 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G233900 [exp] 197 / 3e-56 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 185 / 7e-51 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.006G202900 [exp] 52 / 9e-07 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.004G154600 [exp] 47 / 3e-05 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020892 pacid=23177999 polypeptide=Lus10020892 locus=Lus10020892.g ID=Lus10020892.BGIv1.0 annot-version=v1.0 ATGGCCGAGCTCGGCCGCCGGAATCGGCGCAACACATGGTGCTGCTCCATCACGCATCCTCCCTGCAGAAGCCCCGAGTACGACTGCCCCACCGCGTCTT CCAAGCCCAAGCCCAAATCCGAGCTCCCTTTCAAGACTCGCTCCAACGATTCGCCTCAGAGCTTGAAGCTGAGCTTCGTCGGCAAGATTGACCCCCGGAA GATCCTTTCCCCCGGACGAATTTCCCCGATCGACTCCGATCCTACCGCCGGGGAGCAGCTGGCGGCGGCTGCGGCGTCACCAGCGATGATGACCGAGGTG GATCAGATTGCTGCTCCGGCCGTGGAATCCACGGCGGAGACGGAATGTGCGAGATCCGACAGGTCAGCCTCTTTCAGAGAACGGAACGATGTTGCCTCCG GTGTTGCTTCGACGGTGGCCGGTTCGGGTTCGGGGCATTTTGGGATCGATGCGGATAACGATTTGTTGGACGTGAGGCTGAATGTGAGGGGGAAGAGAGG AGGTTCATTGGTCTTGGAGATGAGCTCGGACATTCTGATGGCGAACTCGGATGTTTTGGGAGAGTTAGTAGCAGAGTTCAGGAAGGGTTTGAAGGTGAAT CGTTCTGCCAAGGAGAGTACTGTGAGTAGTGGTAGTAGTTCGATGAAGGTTTGCAGAATTGAGGTCCCTGATGTGGAAAATTTGGGGGTTTTCAGAGATA CGATTGAGTTGATGTTTGTGGAGGATATTACCACAAAGCTTTTGAAGTATGGAGCTTATCGAGCCATTTCTATTCTTGAGGTATCAGCTGATCTTAAGTT TACTCAAGGCGCTACATCTTGCTTAAACTACCTCGCAGCAGTTCCTTGGACTGAAGAAGAAGAGGAAAGACTCAGACGCGTGTTGACTGTGCACAACTTC GACGAAGCAGCAACCAGCGAAATTTTTGACAGACTCGACTTGTGGAAATCAAGCGAAGGTTCACAATGGGATTTGACCAAACAACTTGCCTGGTCAGTCA CCGCCTGTACCAATCCATTTGCAAGAAACGAATTGAAGTCATTGGTAAAAGCGCTCGTTTCCAAGAGCTCCGTCTATGAGAAAGAGCAGCCGGTCTTAAA CAAGGCTGATGTGTACGTCATTTGCCAGAGCTGCCTAGACTCCCTAGTCGGCCTATTCGACGAGGCATCGAATCCTAATAACACTAACGGAAGCATACCG ACTAAAAAGTACGTGGAGAGGCCACTGGTCGAGAGAATATCGACGCAGGTTGACAACATTAACTGGCTCCAGGAGATCCTGCTAGAATGGCAGATGGCTG AGGAATTCGTCGACATGTGGGGGAACCAAGAAGAACTCAATAAGCTGCACGAGGACGCATCTCCTTTGTTTAGATACGAACTGAGCCGGGTTTCGGCAGG GTTGTTCATAGCCATGGGAACGAGGAGGTTGCATTGTCAGTCGGAGTCAAGGGCGAGGCTTTTCAAAACATGGTTTGGACCGATGCTTCAGGATTTCGGC TGGATTCAGAGGTGCAAGAAAGGGCTGGACATGAAAGTGTTGGAAGAAGCAATGGGACAGTCGCTGCTAACACTTCCTTTGAAGATGCAGCATACGCTGT TTATGGAATGGTTTAGCCATTTCTCCAAGCATGGCAGTGACTGCATCAACCTCAGCAAGGCCTTCCAGATCTGGTGGCGAAGGTCGTTCCTCCGAGGGTC GGAGTCTCACAGCGTCGAATCCAGGTAG
AA sequence Show only first row Show all	>Lus10020892 pacid=23177999 polypeptide=Lus10020892 locus=Lus10020892.g ID=Lus10020892.BGIv1.0 annot-version=v1.0 MAELGRRNRRNTWCCSITHPPCRSPEYDCPTASSKPKPKSELPFKTRSNDSPQSLKLSFVGKIDPRKILSPGRISPIDSDPTAGEQLAAAAASPAMMTEV DQIAAPAVESTAETECARSDRSASFRERNDVASGVASTVAGSGSGHFGIDADNDLLDVRLNVRGKRGGSLVLEMSSDILMANSDVLGELVAEFRKGLKVN RSAKESTVSSGSSSMKVCRIEVPDVENLGVFRDTIELMFVEDITTKLLKYGAYRAISILEVSADLKFTQGATSCLNYLAAVPWTEEEEERLRRVLTVHNF DEAATSEIFDRLDLWKSSEGSQWDLTKQLAWSVTACTNPFARNELKSLVKALVSKSSVYEKEQPVLNKADVYVICQSCLDSLVGLFDEASNPNNTNGSIP TKKYVERPLVERISTQVDNINWLQEILLEWQMAEEFVDMWGNQEELNKLHEDASPLFRYELSRVSAGLFIAMGTRRLHCQSESRARLFKTWFGPMLQDFG WIQRCKKGLDMKVLEEAMGQSLLTLPLKMQHTLFMEWFSHFSKHGSDCINLSKAFQIWWRRSFLRGSESHSVESR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13690			PRLI-interacting factor, putat...		Lus10020892 [exp]	0	1
AT5G58530			Glutaredoxin family protein (....		Lus10007517 [exp]	1.4	0.8379
AT4G05460			RNI-like superfamily protein (...		Lus10023277 [exp]	5.3	0.8375
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	6.0	0.8337
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10004642 [exp]	6.9	0.8127
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Lus10023050 [exp]	8.7	0.7942
AT2G29900		PS2	Presenilin-2 (.1)		Lus10031966 [exp]	10.0	0.8273
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10035483 [exp]	12.2	0.8000
AT1G12310			Calcium-binding EF-hand family...		Lus10024567 [exp]	15.0	0.7630
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	15.5	0.8198
AT4G13840			HXXXD-type acyl-transferase fa...		Lus10016638 [exp]	17.3	0.8052

Compare expression of checked genes

Lus10020892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.