Lus10020893 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G13680 2905 / 0 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
AT5G13000 2206 / 0 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2)
AT2G31960 2158 / 0 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2)
AT1G05570 2145 / 0 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2)
AT3G59100 1902 / 0 ATGSL11 glucan synthase-like 11 (.1)
AT1G06490 1880 / 0 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
AT3G14570 1840 / 0 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2)
AT5G36870 1720 / 0 ATGSL9, ATGSL09 glucan synthase-like 9 (.1)
AT4G03550 1480 / 0 ATGSL5, PMR4, GSL5, ATGSL05 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1)
AT3G07160 1447 / 0 CALS9, ATGSL10 glucan synthase-like 10 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039199 2171 / 0 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
Lus10003920 2166 / 0 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2)
Lus10037469 2088 / 0 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2)
Lus10002097 1965 / 0 AT2G13680 1916 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Lus10001424 1874 / 0 AT1G06490 2926 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
Lus10042478 1793 / 0 AT3G14570 2889 / 0.0 glucan synthase-like 4 (.1.2)
Lus10033482 1743 / 0 AT2G13680 1556 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Lus10013744 1547 / 0 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2)
Lus10033483 1531 / 0 AT2G13680 1447 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G058300 2980 / 0 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Potri.001G012200 2203 / 0 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
Potri.003G214200 2191 / 0 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
Potri.001G230000 2135 / 0 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
Potri.002G058700 1894 / 0 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
Potri.005G203500 1875 / 0 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
Potri.011G095100 1818 / 0 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2)
Potri.015G089300 1513 / 0 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1)
Potri.013G131300 1476 / 0 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1)
Potri.001G011900 1457 / 0 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF02364 Glucan_synthase 1,3-beta-glucan synthase component
Representative CDS sequence
>Lus10020893 pacid=23177924 polypeptide=Lus10020893 locus=Lus10020893.g ID=Lus10020893.BGIv1.0 annot-version=v1.0
ATGCCGAACCAGGAGGCCAGTCCTCATTTAGTCAGGCGGTCGTCGCGTAGCGCGGCCACCACAACGTTCTCGACGATCGAAGTCTTCGACAACTCAGTCG
TTCCTTCCTCTTTGGAATCTATTAAGCCGATTCTCAGAGTCGCCAATGAGATCCAAAATGAGCGTCCTCGAGTTGCCTATCTTTGTCGATTTTATGCATT
TGAAAAGGCACATAGGCTGGATCCCAACTCCAGTGGACGTGGTGTGAGGCAATTCAAAACAGCGTTATTGCAAAGAGTAGAAAGGGCCTATGAACCAGCC
GGAGTTCTTCTTGAAGTTCTTTACGCCGTCAATAAGACTGAGAAAGTTGAAGAAGTTGCCCCTGAGATTATTGCTGCTGCTAGAGACATCCAAGAAAAGA
AGGAAATTTATGCCCCGTATAACATTCTTCCCCTGGACTCTGCTGGAGCTTCTCAGTCAATCATGCAACTCGAAGAGGTCAAGGCTGCTGTTGCAGCACT
GTGGAACACCCGAGGCTTGTCATGGCCCTCATCTTTCGAGCAGCACAGGCAGAAAGCTGGGGATCTGGACCTTCTTGACTGGTTAAGGGCCATGTTTGGC
TTCCAGAGGGACAGTGTTCGGAACCAAAGGGAGCATTTGATATTGCTACTTGCCAATAACCATATCAGGCTCAACCCCAAGCCTGAACCTCTTAACAAGG
CACGTGCTCTTGATGAAAGAGCGGTAGACGCAGTTATGCATAAGATCTTCAAAAACTATAAGAACTGGTGCAAGTTCTTGGGACGAAAACACAGTTTACG
GCTTCCCCAAAGCCAGCCAGAAATCCAACAAAGAAAAATACTTTACATGGGTTTGTATCTTCTTATCTGGGGTGAAGCAGCTAATGTGCGGTTCATACCA
GAATGTCTGTGCTACATCTTTCACAATATGGCCTATGAACTCCATGGCCTGTTGGCTGGAAATGTCAGCATTGTAACTGGAGAAAATATTAAGCCTTCTT
ACGGTGGAGATGACGAGGCATTCCTGAGGAAAGTTATAACACCAATTTATCGCGTAATTGCAAAGGAAGCAAGCAAGAGTCAAAACGGCACAGCTTCTAG
TACAGAATGGTGCAACTATGATGATTTGAATGAGTATTTTTGGTCATCTGATTGCTTCTCCCTTGGTTGGCCTATGCGGGATGATGGTGCATTCTTTATA
TCAACACGTCATGCAGCTAAGGGCAAGGACACTCCTCAAGCGAATTCTGGAAGCACAGGGAAATCGTATTTTGTTGAAACCAGAACCTTTTGGCACATAT
TTCGAAGCTTTGACAGATTGTGGACTTTTTATGTGCTGGCCTTTCAGTTAATGATCATCTATGCCTGGAGTGGAGTAGCGATACAAAATATACTTAGAAG
AGACGTGCTGTATTACTTATCAAGTATCTTCATCACTGCGGCATTTCTTCGACTCCTTCAGAGCATTCTAGATGTTGTTCTCAATTTTCCTGGATACCAT
AGGTGGAAATTCACTGATGTGCTGAGGAACATTCTTAAAATCATTGTTAGTTTTGCATGGGCTGTTATTCTTCCACTTTGTTATACCGGAAGCTTTAAGC
AAGTGATTGGCTTTGCAAATGGAATGACTTTCCTCCGCACTGTGAAGAGTATTCCTCCAATATACTTGCTAGCTGTAGTCATATATATGACTCCCAATAT
CCTGGCGGCTGCATTATTCATCTTCCCCATGCTCCGAAGATGGATAGAGAACTCAGACTGGCTCATTATTAGATTACTATTGTGGTGGTCACAGCCAAGG
ATTTACGTTGGAAGAGGAATGCATGAAAGTCAATTTTCACTTATAAAGTACACTATCTTTTGGGTGTTGCTTTTATGTTCCAAGTTCACCTTCAGCTTCT
TTATCCAGATAAAGCCCCTAGTAAAACCAACAAAAGACATAATGAATATTAGACATGTAGAGTATACCTGGCATGAGATTTTCCCTTATGCCAAGCACAA
TTATGGAGCTGTACTGTCACTCTGGGCACCAACAATCTTGGTGTATTTTATGGATACTCAAATTTGGTATTCTATATTCTCAACCCTATATGGAGGCTTT
GAGGGAGCAGTTGATCGTCTAGGAGAGATACGAACTCTGGGCATGCTGAGATCACGGTTTCAGTCATTGCCAGGTGCATTTAATGCTTTTCTGGTGCCTT
CTGACAAGAAACGGAGAAAGGGATTCTCTCTGTCAAAGAGATTTGCTGAGGTTTCAGCAAATAGAAGAAGTGAAGCTGCAAAATTCGCGCAGTTATGGAA
TGAAGTGATTACCAGTTTCCGAGAAGAAGATCTTATCAGTGACAGGAAAGGCTACACAACTGAGATAGATAATATGGATTTGTTAGTAGTTCCATATACA
TCGGATCCTAGCATCAAACTGATCCAGTGGCCACCATTTTTGCTTGCAAGCAAGATCCCTATAGCTCTAAATATGGCAGCCCAGTTCCGATCAAAGGACT
CCGACTTATGGAAACGTATATGTGCAGATGAGTATATGAAATGTGCCATCATCGAGTGTTATGAATCCTTCAAACAAGTCCTCAATATTTTGGTCATTGG
GGAGAATGAAAAAAGGATAATCGGCATCATCATCAAAGAAATAGAGAGTCATGTATCAAAGGGCACACTTCTTGCAAATTTCAGAATGGCTTCGTTACCA
GCTCTATGTGAAAAAGTTGTGGTGCTAGTGGGAATCCTGAAAGATGGTGATCCTTCAAAGAGAGATAATGTGGTATTGTTGCTGCAAGACATGTTAGAAT
TAGTTACCCGTGATCTGATGGTGAATGAGAACCGTGAATTAGTAGATGTCGGACACAGTGGCAAGGATTCTGGAAGACAACTCTTTGCTGGTACTGATCC
GAGACCTGCTATTGTGTTCCCTCCTCCTGTTACTGCACAGTGGGATGAACAGATAAGACGACTTCATCTTCTTTTGACGGTAAAGGAATCTGCCATGGAT
GTACCAGCGAACCTGGAAGCACGAAGAAGGATTTCCTTTTTCACAAATTCATTGTTCATGGACATGCCGCGCGCTCCACGCGTCCGCAAAATGCTCTCAT
TCAGTGTCATGACCCCATACTATAGTGAGGAAACTGTCTATTCTAAATCTGACCTTGAAATGGAAAATGAAGATGGTGTGTCGATTATATACTACTTGCA
GAAAATCTACCCAGTTAGAGGAATGATGTATTATCGAAGAGCTTTGAAACTCCAGGCTTTTCTTGATATGGCTAATGAGAGTGAGATATTAGCTGGTTAT
AAAGCCATTACAAATCCAACTGAGGAAGATAAGAAAAGTCAAAGGTCCCTCTCCGCTCAATTGGAGGCAGTAGCAGACATGAAGTTTACATATGTAGCTA
CATGCCAGATTTATGGAAACCAGAAGAGGAAAGGAGATCGTCATGCAACAAACATCCTTAATTTGATGGTTAACAATCCTTCGCTACGTGTTGCATATAT
CGACGAAATAGAAGAACGTGATGGGGCAAAAACGCAAAAAGTTTGCTACTCCGTTCTGGTGAAAGCTGTTGATAATCTTGATCAGGAAATTTATCGTATC
AAACTGCCGGGTCCAGCAAAATTAGGTGAAGGAAAGCCTGAAAATCAGAACCATGCCATAGTATTCACTAGAGGGGAAGCTATGCAAGCAATTGATATGA
ATCAGGATAACTATCTAGAAGAAGCTTTTAAAATGCGCAACCTTCTTGAAGAATTCCATGAGGACCACGGGGTGCGGCCACCTACAATTTTAGGTGTTCG
TGAACATATCTTCACGGGAGGTGTTTCTTCTTTGGCTTGGTTCATGTCAAATCAAGAAACAAGTTTTGTTACACTTGGTCAAAGAGTTCTTGCAAGGCCG
TTGAAGATACGATTCCACTATGGGCATCCTGATGTGTTCGACAGAATTTTCCACATAACCCGTGGGGGCGTCAGCAAAGCTTCCCGCGGCATCAACTTGA
GCGAGGATATTTTTGCTGGATTCAATTCAACCCTACGGAGAGGGAATGTCACTCATCACGAGTATATCCAAGTTGGTAAAGGTAGAGATGTGGGGCTCAA
CCAAATCTCTTTGTTTGAAGCGAAAGTAGCATGCGGGAATGGAGAGCAAACACTCAGCAGGGATATCTATCGACTCGGCCATCGATTTGATTTCTTCCGT
ATGCTTTCCTTCTACTACACAACAATTGGATTTTATATCAGCTCAATGGTGGTGGTCTTCACAGTTTATGCTTTCTTATATGGGAGATTGTATTTGGCAT
TGAGTGGGTTGGAGGGTTCTATAATCAAGTTTGCGAAGCATAGAGGAGATACAGCTCTAAGGGCAGCAATGGCTTCACAGTCAGTTGTTCAGCTAGGACT
TCTCACAGCCTTGCCCATGGTCATGGAGATGGGCCTGGAGAGAGGGTTCAGAACAGCATTAGGTGAAATCATTATTATGCAGCTTCAGCTTGCCGCAGTT
TTCTTCACCTTTTCACTAGGGACAAGGGTTCATTACTTTGGGAGAACGGTCCTCCACGGCGGTGCAAAATACAGAGCCACAGGTCGTGGCTTTGTCGTTC
GACATGAGAAGTTTGCTGAGAATTACAGGATGTACTCAAGAAGTCACTTTGTCAAAGCCCTGGAGCTACTGCTGCTGCTGATATGTTACCAGATATACGG
GAAAGCCGTAAGTGGGATCGCGTACATGCTCGTCACCTCTTCTATGTGGTTCTTAGTATGCTCGTGGTTGTTCGCACCTTTCCTATTCAACCCATCAGGA
TTCGAGTGGCAGAAGGTTGTTGATGATTGGGATGACTGGACGAAATGGATCAACAGCCGAGGTGGAATCGGTGTGCCTGCAAATAAGAGCTGGGAATCAT
GGTGGGAAGAGGAACAAGAACATCTCCAACACACCGGCATCTCAGGACGGATTTGCGAAGTAGTTTTGGCTCTCCGTTTCTTCATCTATCAGTACGGCAT
CGTTTACCAGCTCAAAGTAACCAAAGCCACTTCAGCTGGACGGGAACACAGTATTTCCGTTTATGGTCTGTCGTGGCTGGTTATTGTCGCTATGATGCTA
ATCCTGAAGACTGTATCAACGGGTAGAAAGAAGTTCAGCGCGGACTTCCAGCTAATGTTCAGACTACTAAAGTTCATACTGTTCATAGGATTCGTGGTGA
CACTCATCATCTTGTTCACTACACTCCATCTGACGGTGGGAGATGTGTTCCAGAGCTTGTTGGCGTTCCTCCCAACGGGATGGGCGATTCTGCAGATATC
GCAAGCTTGCAAGCCGATAGTAAAGGGATTGAAGATGTGGGGGTCGGTGAAGGCATTGGGTAGAGGGTACGAGTACATGATGGGGGTGTTACTGTTTCTA
CCCATAGCAGTGTTGGCTTGGTTCCCATTCGTGTCAGAGTTCCAGAACAGACTTCTGTTCAACCAAGCCTTCAGCAGAGGTCTTCAGATCCAACGCATCC
TCTCTGGTGGTAAGAAGCACAAGTGA
AA sequence
>Lus10020893 pacid=23177924 polypeptide=Lus10020893 locus=Lus10020893.g ID=Lus10020893.BGIv1.0 annot-version=v1.0
MPNQEASPHLVRRSSRSAATTTFSTIEVFDNSVVPSSLESIKPILRVANEIQNERPRVAYLCRFYAFEKAHRLDPNSSGRGVRQFKTALLQRVERAYEPA
GVLLEVLYAVNKTEKVEEVAPEIIAAARDIQEKKEIYAPYNILPLDSAGASQSIMQLEEVKAAVAALWNTRGLSWPSSFEQHRQKAGDLDLLDWLRAMFG
FQRDSVRNQREHLILLLANNHIRLNPKPEPLNKARALDERAVDAVMHKIFKNYKNWCKFLGRKHSLRLPQSQPEIQQRKILYMGLYLLIWGEAANVRFIP
ECLCYIFHNMAYELHGLLAGNVSIVTGENIKPSYGGDDEAFLRKVITPIYRVIAKEASKSQNGTASSTEWCNYDDLNEYFWSSDCFSLGWPMRDDGAFFI
STRHAAKGKDTPQANSGSTGKSYFVETRTFWHIFRSFDRLWTFYVLAFQLMIIYAWSGVAIQNILRRDVLYYLSSIFITAAFLRLLQSILDVVLNFPGYH
RWKFTDVLRNILKIIVSFAWAVILPLCYTGSFKQVIGFANGMTFLRTVKSIPPIYLLAVVIYMTPNILAAALFIFPMLRRWIENSDWLIIRLLLWWSQPR
IYVGRGMHESQFSLIKYTIFWVLLLCSKFTFSFFIQIKPLVKPTKDIMNIRHVEYTWHEIFPYAKHNYGAVLSLWAPTILVYFMDTQIWYSIFSTLYGGF
EGAVDRLGEIRTLGMLRSRFQSLPGAFNAFLVPSDKKRRKGFSLSKRFAEVSANRRSEAAKFAQLWNEVITSFREEDLISDRKGYTTEIDNMDLLVVPYT
SDPSIKLIQWPPFLLASKIPIALNMAAQFRSKDSDLWKRICADEYMKCAIIECYESFKQVLNILVIGENEKRIIGIIIKEIESHVSKGTLLANFRMASLP
ALCEKVVVLVGILKDGDPSKRDNVVLLLQDMLELVTRDLMVNENRELVDVGHSGKDSGRQLFAGTDPRPAIVFPPPVTAQWDEQIRRLHLLLTVKESAMD
VPANLEARRRISFFTNSLFMDMPRAPRVRKMLSFSVMTPYYSEETVYSKSDLEMENEDGVSIIYYLQKIYPVRGMMYYRRALKLQAFLDMANESEILAGY
KAITNPTEEDKKSQRSLSAQLEAVADMKFTYVATCQIYGNQKRKGDRHATNILNLMVNNPSLRVAYIDEIEERDGAKTQKVCYSVLVKAVDNLDQEIYRI
KLPGPAKLGEGKPENQNHAIVFTRGEAMQAIDMNQDNYLEEAFKMRNLLEEFHEDHGVRPPTILGVREHIFTGGVSSLAWFMSNQETSFVTLGQRVLARP
LKIRFHYGHPDVFDRIFHITRGGVSKASRGINLSEDIFAGFNSTLRRGNVTHHEYIQVGKGRDVGLNQISLFEAKVACGNGEQTLSRDIYRLGHRFDFFR
MLSFYYTTIGFYISSMVVVFTVYAFLYGRLYLALSGLEGSIIKFAKHRGDTALRAAMASQSVVQLGLLTALPMVMEMGLERGFRTALGEIIIMQLQLAAV
FFTFSLGTRVHYFGRTVLHGGAKYRATGRGFVVRHEKFAENYRMYSRSHFVKALELLLLLICYQIYGKAVSGIAYMLVTSSMWFLVCSWLFAPFLFNPSG
FEWQKVVDDWDDWTKWINSRGGIGVPANKSWESWWEEEQEHLQHTGISGRICEVVLALRFFIYQYGIVYQLKVTKATSAGREHSISVYGLSWLVIVAMML
ILKTVSTGRKKFSADFQLMFRLLKFILFIGFVVTLIILFTTLHLTVGDVFQSLLAFLPTGWAILQISQACKPIVKGLKMWGSVKALGRGYEYMMGVLLFL
PIAVLAWFPFVSEFQNRLLFNQAFSRGLQIQRILSGGKKHK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G13680 GLS2, ATGSL02, ... ARABIDOPSIS THALIANA GLUCAN SY... Lus10020893 0 1
AT4G01860 Transducin family protein / WD... Lus10038045 1.4 0.9345
AT1G32490 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3... Lus10033690 3.7 0.9019
AT3G08850 ATRAPTOR1B, RAP... HEAT repeat ;WD domain, G-beta... Lus10014156 6.6 0.8672
AT4G21660 proline-rich spliceosome-assoc... Lus10018475 7.1 0.8675
AT2G06990 HEN2 hua enhancer 2, RNA helicase, ... Lus10027599 8.1 0.8877
AT3G54670 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE... Lus10024895 8.9 0.8772
AT3G09660 MCM8 minichromosome maintenance 8 (... Lus10023169 9.6 0.8330
AT1G03190 ATXPD, UVH6 ULTRAVIOLET HYPERSENSITIVE 6, ... Lus10014662 10.1 0.8574
AT4G01860 Transducin family protein / WD... Lus10009986 12.5 0.8790
AT1G73960 TAF2 TBP-associated factor 2 (.1.2) Lus10016716 12.6 0.8872

Lus10020893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.