Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64030 910 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 863 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 851 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 802 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G40280 575 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 563 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 535 / 1e-180 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 476 / 3e-158 Putative methyltransferase family protein (.1) AT1G77260 467 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 462 / 1e-152 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033481 [exp] 1195 / 0 AT5G64030 924 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 957 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018954 [exp] 898 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 891 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10042767 [exp] 890 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 865 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028354 [exp] 780 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041804 [exp] 772 / 0 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014274 [exp] 757 / 0 AT3G51070 1041 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G104000 [exp] 944 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 943 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 880 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 873 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G118100 [exp] 828 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 802 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 600 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 536 / 0 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 471 / 1e-156 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 461 / 1e-152 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10020894 pacid=23177964 polypeptide=Lus10020894 locus=Lus10020894.g ID=Lus10020894.BGIv1.0 annot-version=v1.0 ATGGCACAAGGGAAGTATACTAGAATAGACACCAGCACCAGCACCACCAGCAACAGCAACAGCAGACGACAGTCATCAAGCTATTGGTCAACAGTGACCA TTGTGGTGTTTGTAGCTCTATGTTTGGTTGGGGTGTGGATGATGACATCTTCATCTCTCATTCCTGGTCTAAACCTTGACATGCCTGTCCAAGAAACCGC CAAGAATGAAGTGAAAGACCAAGCCGGTCTTGTTGTGGATGATGCAAAGCCAGCAGAAGATGATAAGGAGAAGAAAACAGAAGAGACATTTCAACAGAAG CCTGATGAGATCAAGCCAGAGGAGAAACCTGAAGAGAAACCTGAAGAGAAACCGAAGGTTCAGCCTGGTGAAGAAGAGTCTCCATCTAGTGATGGACAAA GTACCGAGACAAGATTGAACGATGCTGCGCCACAAGTAGACTCAAAGGAGAGTACTGATTCTGTTGATAATGAGAACAAATCTGATTCTATTGATAACAA TAATAAGGCATCGTATGATAAACCAGACGATAGAAAATCTGTGGAGGAGGAGAAAGGGGTTGAGAAAGAGAGCAAGGAAGTCAAGAATCAATTTGCGGTC GAGCAATTTCCATCCGGAGCTCAGGCGGAGCTTACAAACGAAACCTCCACCGAGAATGGATCGTGGTCAACTCAGGCAGCGGAATCAGAAAACGAGAAGG AAAGCCAAGAGACTTCTAAAGAGCAACAACTTGTACAGAGTAATTGGAAGTTATGCAATAGCACAGCTGGACCTGATTTCATTCCGTGTCTTGATAACTG GAAAGCAATCCAGAGTCTTAGATCTACCAAACATTACGAACATCGAGAGCGACATTGTCCGGAAGAGCCTCCGACTTGCCTTGTTCCGCTTCCAGAAGGT TACAAGCGTCCAATTGAGTGGCCTAAAAGCAGGAAAAAGGCAAGAAAGCTCGCTACTTTCTTCTTTATTTGGTACTCAAATGTTCCCCACCCGAAACTTG TTGAATATAAGGGCCACCAGAATTGGGTGAAAGTTGATGGTGATTACCTCACTTTCCCTGGTGGGGGTACTCAGTTCAAGCATGGAGCTCTCCACTATAT CGACTTTATAAATGAGAATGTGCCCGACATTGCATGGGGAAAGCGTAGCCGCATAGTCTTGGATGTCGGATGCGGTGTTGCCAGTTTCGGAGGATATCTC TTCGACAGAGATGTTCTGACGATGTCGTTTGCCCCTAAAGACGAACACGAAGCCCAAGTTCAGCTTGGTCTTGAGAGAGGAATTCCTGCCTTATCTGCTG TTATGGGCACTCAAAGACTTCCCTTCCCGGGCATCATTTTTGATGTTGTGCATTGCGCACGTTGTAGGGTACCCTGGCATATTGAAGGCGGTAAACTTCT TCTGGAATTGAATCGGGTGTTGAGACCGGGCGGGTATTTTGTATGGTCCGCTACTCCTGTATATCAGAAACTTCCTGAAGATAAAGAAATATGGAAAGCC ACAAGCGAGTTATTAGATTCGATATGCTGGGAACGTGTAGCCAGAGTCAAGGACAGACTGAATGGAGTCGGTATAGCTATATACAGGAAGCCGATCAATA ACACGTGCTATGAAAAGAGATTAGTGCCACAACCTCCAATGTGCGAAGCATCTGATGATCCTAATGCCGCCTGGAAGGTCCCTCTACAAGCATGCATGCA TAAGTTGCCAACGGATTCGTTTGAACGCGGGCCTCAATGGCCTCAACAATGGCCGGCTAGATTGGACAAGACTCCATACTGGATGTTAGGTTCTGAAATG GGAGTTTACGGAAAACCTCAACCGGAAGATTTCGTTGCTGATTGTGAGCATTGGAAACGAGTTGTTTCCAAGTCATATATCAATGGGATGGGAATAAACT GGGGAAGTGTCAGGAATGTTATGGACATGAGAGCTATCTATGGAGGGTTCGCGGCTGCTTTGAAGGATATGAACTTATGGGTCATGAATGTTGTCCCGAT CGACTCCCCTGACGTCCTCCCCGTAATTTACGAGCGTGGACTCTTCGGTATCTATCACGATTGGTGCGAGTCATTCAGCACATACCCTAGGTCGTACGAT CTTCTTCATGCTGATCATCTTTTTTCCAAGATCAAGCAAAAGTGCAATGTAGTTCCTCTAGTTGTGGAGGTTGATCGGATCCTGAGGCCGGAAGGAAAGC TAATAGTAAGAGACAACACCGAGACTGTGAGTGAAGTCGAAAAGATTCTAAGGTCGATGAAGTGGGAGATCCGGATGACGTATAGTAAAGACGGTGAAGG GTTGCTTTCTGCGCAGAAGACAACGTGGCGGCCTAAGGAATCTGAAACTCTAGATTATGCTATCATGAAATGGCCTAGAACACCGTAG
AA sequence Show only first row Show all	>Lus10020894 pacid=23177964 polypeptide=Lus10020894 locus=Lus10020894.g ID=Lus10020894.BGIv1.0 annot-version=v1.0 MAQGKYTRIDTSTSTTSNSNSRRQSSSYWSTVTIVVFVALCLVGVWMMTSSSLIPGLNLDMPVQETAKNEVKDQAGLVVDDAKPAEDDKEKKTEETFQQK PDEIKPEEKPEEKPEEKPKVQPGEEESPSSDGQSTETRLNDAAPQVDSKESTDSVDNENKSDSIDNNNKASYDKPDDRKSVEEEKGVEKESKEVKNQFAV EQFPSGAQAELTNETSTENGSWSTQAAESENEKESQETSKEQQLVQSNWKLCNSTAGPDFIPCLDNWKAIQSLRSTKHYEHRERHCPEEPPTCLVPLPEG YKRPIEWPKSRKKARKLATFFFIWYSNVPHPKLVEYKGHQNWVKVDGDYLTFPGGGTQFKHGALHYIDFINENVPDIAWGKRSRIVLDVGCGVASFGGYL FDRDVLTMSFAPKDEHEAQVQLGLERGIPALSAVMGTQRLPFPGIIFDVVHCARCRVPWHIEGGKLLLELNRVLRPGGYFVWSATPVYQKLPEDKEIWKA TSELLDSICWERVARVKDRLNGVGIAIYRKPINNTCYEKRLVPQPPMCEASDDPNAAWKVPLQACMHKLPTDSFERGPQWPQQWPARLDKTPYWMLGSEM GVYGKPQPEDFVADCEHWKRVVSKSYINGMGINWGSVRNVMDMRAIYGGFAAALKDMNLWVMNVVPIDSPDVLPVIYERGLFGIYHDWCESFSTYPRSYD LLHADHLFSKIKQKCNVVPLVVEVDRILRPEGKLIVRDNTETVSEVEKILRSMKWEIRMTYSKDGEGLLSAQKTTWRPKESETLDYAIMKWPRTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10020894 [exp]	0	1
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10032510 [exp]	2.0	0.8372
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	3.3	0.8453
AT5G13260			unknown protein		Lus10002574 [exp]	7.5	0.8089
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10026093 [exp]	8.5	0.7954
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10016012 [exp]	11.4	0.8042
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10007201 [exp]	11.7	0.7623
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10025665 [exp]	12.7	0.7898
AT5G42660			Protein of unknown function (D...		Lus10016294 [exp]	13.3	0.7810
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Lus10001531 [exp]	14.6	0.6913
AT1G76400			Ribophorin I (.1)		Lus10016038 [exp]	18.9	0.8043

Compare expression of checked genes

Lus10020894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.