Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09300 627 / 0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) AT1G21400 590 / 0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G34780 306 / 1e-100 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G59900 143 / 3e-38 AT-E1 ALPHA, AT-E1ALPHA pyruvate dehydrogenase complex E1 alpha subunit (.1) AT1G24180 139 / 9e-37 IAR4 IAA-CONJUGATE-RESISTANT 4, Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G01090 127 / 6e-32 PDH-E1 ALPHA, PDH-E1ALPHA pyruvate dehydrogenase E1 alpha (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033480 [exp] 743 / 0 AT5G09300 558 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10028648 [exp] 609 / 0 AT1G21400 645 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10018945 [exp] 600 / 0 AT1G21400 644 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10000772 [exp] 397 / 4e-137 AT1G21400 417 / 1e-145 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10030820 [exp] 133 / 2e-35 AT1G59900 546 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10010728 [exp] 135 / 5e-35 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10013295 [exp] 134 / 6e-35 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10029216 [exp] 134 / 1e-34 AT1G59900 695 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10002678 [exp] 121 / 5e-30 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064000 [exp] 657 / 0 AT5G09300 654 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.005G185400 [exp] 591 / 0 AT5G09300 619 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.002G074900 [exp] 577 / 0 AT1G21400 586 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Potri.008G192500 [exp] 137 / 4e-36 AT1G59900 673 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.010G038400 [exp] 137 / 5e-36 AT1G59900 651 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.002G179500 [exp] 123 / 2e-30 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component
Representative CDS sequence Show only first row Show all	>Lus10020895 pacid=23177944 polypeptide=Lus10020895 locus=Lus10020895.g ID=Lus10020895.BGIv1.0 annot-version=v1.0 ATGGCTGCTCTCCTGAGAAAATCCGCCAGATTAGCCGCCGCTACCCTTGACGTCAGTTTGTGCTCTCACCTGCGCAGTTCCTCCTGCCTATGCAAGAGTT TCCGCGAAGCCTACGGAAGGAGTTTCGGCGGCAGAGATGTTCTTCTCGCTGCTCGTCGGTTTCAGTCCACTCAATCCGACAATCGGTTAGATTCAAGCTG CAATGCCGACGGGATCAGCCAGAAATTCAACTTGCTGGGAGGGGAAGTTGCATATACCTCTCGGATGAGTTTCACATCTGAATCTCCAGAAGAACGGGTT CCATGTTACCGTGTACTTGACGATAATGGTCAGCTAATCGACTCTAGTAACTTTGCTGGGATTGACAGAGAAATCGGTACGAAAATGTACACCGATATGG TTAAACTGCAAATCATGGATACCATATTCTATGAAGCACAGAGACAAGGAAGGATTTCATTCTACGTTACTACTACCGGAGAGGAGGCAATCAACATTGC ATCAGCAGCTGCACTAAAGATTGATGATTTCATTGTCCCGCAGTATCGAGAACCAGGAGTTCTCTTGTGGCGCGGTTTCACCCCTCAGGATTTTGCAAAC CAATGCTTTGGCAACAAATTTGATGGTGGTAAAGGCAGGCAGATGCCTGTGCATTATGGATCGAAACAGCTTAATTACTTCACCGTGGCATCGACAATTG CTTCGCAACTTCCTCATGCTGTGGGTGCTGCATATTCTTTGAAGATGGATGGGAAAGATGCTTGTGCTGTCAGTTACTTTGGTGATGGCGGTTCCAGTGA GGGAGATTTCCATGCAGCTTTAAACTTTGCTGCGGTTATGGAAGCTCCGGTCATATTTATCTGCCGGAACAATGGATGGGCTATTAGTACCCCAGCTTCA GAGCAGTTTCGAAGTGATGGAATAGTGGTTAAAGGGAAAGCTTATGGAGTCCGCAGCATCCGCGTCGATGGTAATGACGCTCTCGCAATGTACTCTGCAG TTCGTTCTGCTCGCAAAATGGCAATAACTGAACAAAAACCCATCCTGATTGAGGCTGTAACATATCGAGTGGGGCATCACTCCACTTCAGACGATTCCAC CAAGTATCGTCTACTAGAGGAGATTGAATGGTGGCAAATGGCACGGAACCCTCTCGCCTTATACCGAAAGTGGCTTGAGAGTAACGGTTGGTGGAACAGT GAGCTCGAGGCAGACCTTCGAAGCAACACGAGGAAGGAGCTGTTAAAAGCGATACAAGTAGCAGAAAGAGTGAAGAAGCCACCAGTTGAGGATTTGTTTA CAGATGTATATGATACGGTCCCTTCGAACCTGTGCGAGCAAGAGAAGTTGCTGCAAGAGTCAGTCGCGAGATACCCGCAAGACTATCCAGCTGATGTTCC TCTCAAGGCCACTTCTTGA
AA sequence Show only first row Show all	>Lus10020895 pacid=23177944 polypeptide=Lus10020895 locus=Lus10020895.g ID=Lus10020895.BGIv1.0 annot-version=v1.0 MAALLRKSARLAAATLDVSLCSHLRSSSCLCKSFREAYGRSFGGRDVLLAARRFQSTQSDNRLDSSCNADGISQKFNLLGGEVAYTSRMSFTSESPEERV PCYRVLDDNGQLIDSSNFAGIDREIGTKMYTDMVKLQIMDTIFYEAQRQGRISFYVTTTGEEAINIASAAALKIDDFIVPQYREPGVLLWRGFTPQDFAN QCFGNKFDGGKGRQMPVHYGSKQLNYFTVASTIASQLPHAVGAAYSLKMDGKDACAVSYFGDGGSSEGDFHAALNFAAVMEAPVIFICRNNGWAISTPAS EQFRSDGIVVKGKAYGVRSIRVDGNDALAMYSAVRSARKMAITEQKPILIEAVTYRVGHHSTSDDSTKYRLLEEIEWWQMARNPLALYRKWLESNGWWNS ELEADLRSNTRKELLKAIQVAERVKKPPVEDLFTDVYDTVPSNLCEQEKLLQESVARYPQDYPADVPLKATS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09300			Thiamin diphosphate-binding fo...		Lus10020895 [exp]	0	1
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10037827 [exp]	1.7	0.9349
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10013330 [exp]	5.2	0.9093
AT4G21105			cytochrome-c oxidases;electron...		Lus10006275 [exp]	8.5	0.9336
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	10.4	0.9345
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021047 [exp]	11.1	0.9332
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	16.8	0.9296
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041042 [exp]	17.0	0.9308
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10017762 [exp]	17.3	0.8974
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10021326 [exp]	17.5	0.9250
					Lus10025963 [exp]	20.8	0.9254

Compare expression of checked genes

Lus10020895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.