Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09330 262 / 3e-83 NAC VNI1, ANAC082 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) AT5G64060 248 / 3e-79 NAC ANAC103 NAC domain containing protein 103 (.1) AT3G10500 217 / 4e-65 NAC ANAC053 NAC domain containing protein 53 (.1) AT5G04410 214 / 1e-63 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G10480 193 / 5e-57 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G10490 184 / 8e-56 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT1G34190 192 / 1e-55 NAC ANAC017 NAC domain containing protein 17 (.1) AT3G17730 181 / 2e-54 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G34180 188 / 4e-54 NAC ANAC016 NAC domain containing protein 16 (.1.2) AT1G65910 178 / 5e-50 NAC ANAC028 NAC domain containing protein 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028824 [exp] 213 / 2e-63 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10037939 [exp] 193 / 2e-57 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10017458 [exp] 194 / 1e-56 AT5G04410 379 / 8e-126 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10028713 [exp] 192 / 1e-55 AT1G34190 392 / 2e-130 NAC domain containing protein 17 (.1) Lus10026373 [exp] 181 / 5e-54 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10023537 [exp] 184 / 6e-54 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10042284 [exp] 181 / 7e-54 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10038670 [exp] 191 / 2e-53 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10007377 [exp] 176 / 4e-49 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G109100 [exp] 298 / 1e-97 AT5G09330 265 / 6e-84 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Potri.005G058900 [exp] 294 / 1e-96 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1) Potri.008G031800 [exp] 220 / 3e-66 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229900 [exp] 220 / 3e-66 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.002G061300 [exp] 196 / 1e-56 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.010G229700 [exp] 189 / 1e-55 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3) Potri.005G200100 [exp] 189 / 2e-54 AT1G34190 447 / 2e-151 NAC domain containing protein 17 (.1) Potri.015G030200 [exp] 177 / 3e-53 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.008G081500 [exp] 172 / 2e-50 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.017G139500 [exp] 177 / 1e-49 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10020896 pacid=23177967 polypeptide=Lus10020896 locus=Lus10020896.g ID=Lus10020896.BGIv1.0 annot-version=v1.0 ATGGTGGGAAGCGCAAGGCTGTCTCCGGGGTTCCGCTTTCACCCAACTGATGTTGAGCTCGTTAGGTTTTATCTCAAAAGGAAAGTGATGGGGAAGAAAC TTCCATTTCATTGCATTACTGAGCTTGACATCTACAAACATGCTCCTTGGGATCTTCCATTGAAGTCAGTGTTGAGAACTGGAGATCTGAAATGGTATTT CTTTTGTCCTAGAGAGAAGAAGTACGCAATTGGTCCTCGAATGAAGCGTGCTGCTGAGGGTGGCTATTGGAAATCCACAGGGAAAGACAGACCAGTTCTT TATGATAACGAGGTTGCAGGGATGATCAGAACTTTGGTTTTCCACTTGGGTAAGCCACCAAAGGGGGAGCGAACTGATTGGGTTATGTATGAATATAGAC TCGAAGATAAGAAGTTGATTGATAGTGGTGTTTCGCAAGATTCTTATGTTCTCAGTGTCCTCTTTAAGAAGGATGGGCCAGGACCTAAGAACGGTGCTCA ATATGGGGCACCATTTAAGGAGGAAGAATGGGAGTCGGATGATGAGGAAGATGAAGTCAATGATGGTATTGGAGCTGCTTTATGGGCTGGTGCGTCTACT CCATCTACGGTATTATCAATTGAGAGAACTAATTCAGCTGTCACAAGTCCAGTTGTGCCTGATGGTAGTTGTGTTGTATCACAAGTATCATGTCCAGCAG AGAAAGAAAATGCTTATGTGGTGGGACCTGTTGGACTTGATAACACCAATGCTAGTGAAGGAGTTGCTCAAGCTCTACATGGGGGTCTTGAAGATGTTTT TAGTGCTGCACCTCTTGCTTTTCAGCTTAATCCCCAAGGTGAATATTGTGCTTCTGGAGGTACATTCCAAGCTCAGCATAGCCCTCAAACTGTCCATGTT GCTTCTGAAGAACACGGTGAAGCTGTGCATACTGGATTTGAACCCGTGGCTGAAAATGACGATGTACTGGCTATGTTGGACTACTTCACTGAAGAAGCTC CATTCACACTAGATCAGCTCAACAATACTGAGCAGAAGGGGACGGTGATCGAAAACGTCAATAAAGCAGAAGCTCAAGGCGGTGGAGAGCCCGGTGAAGC CGGCGCCGTCGGAGGAAGAGTTGGGGTTCAGTTCAAGGAAGGGAAGGCTGAGATGGCGGGATTCCCTTCCTATAAATTAAATTGGCTAGGTAAATGA
AA sequence Show only first row Show all	>Lus10020896 pacid=23177967 polypeptide=Lus10020896 locus=Lus10020896.g ID=Lus10020896.BGIv1.0 annot-version=v1.0 MVGSARLSPGFRFHPTDVELVRFYLKRKVMGKKLPFHCITELDIYKHAPWDLPLKSVLRTGDLKWYFFCPREKKYAIGPRMKRAAEGGYWKSTGKDRPVL YDNEVAGMIRTLVFHLGKPPKGERTDWVMYEYRLEDKKLIDSGVSQDSYVLSVLFKKDGPGPKNGAQYGAPFKEEEWESDDEEDEVNDGIGAALWAGAST PSTVLSIERTNSAVTSPVVPDGSCVVSQVSCPAEKENAYVVGPVGLDNTNASEGVAQALHGGLEDVFSAAPLAFQLNPQGEYCASGGTFQAQHSPQTVHV ASEEHGEAVHTGFEPVAENDDVLAMLDYFTEEAPFTLDQLNNTEQKGTVIENVNKAEAQGGGEPGEAGAVGGRVGVQFKEGKAEMAGFPSYKLNWLGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09330	NAC	VNI1, ANAC082	VND-interacting 1, NAC domain ...		Lus10020896 [exp]	0	1
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10041824 [exp]	7.7	0.7607
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	10.2	0.7450
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10027083 [exp]	13.9	0.7457
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10010507 [exp]	17.0	0.7244
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	19.9	0.7518
AT4G31080			Protein of unknown function (D...		Lus10020370 [exp]	20.1	0.7281
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039458 [exp]	22.8	0.6964
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10033676 [exp]	23.9	0.7319
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10000230 [exp]	30.8	0.7043
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	31.3	0.7274

Compare expression of checked genes

Lus10020896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.