Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08430 213 / 1e-62 SWIB/MDM2 domain;Plus-3;GYF (.1) AT5G63700 181 / 3e-50 zinc ion binding;DNA binding (.1) AT5G23480 149 / 8e-39 SWIB/MDM2 domain;Plus-3;GYF (.1) AT2G16485 107 / 4e-24 nucleic acid binding;zinc ion binding;DNA binding (.1) AT3G51120 92 / 2e-19 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) AT1G49520 57 / 2e-08 SWIB complex BAF60b domain-containing protein (.1) AT3G19080 48 / 1e-05 SWIB complex BAF60b domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018078 [exp] 105 / 2e-23 AT2G16485 986 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10042072 [exp] 104 / 4e-23 AT2G16485 1007 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10014271 [exp] 100 / 1e-21 AT3G51120 644 / 0.0 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10025973 [exp] 90 / 1e-18 AT3G51120 487 / 2e-148 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10009333 [exp] 47 / 1e-05 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10019640 [exp] 47 / 2e-05 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10033479 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G078050 [exp] 266 / 2e-79 AT5G63700 368 / 3e-116 zinc ion binding;DNA binding (.1) Potri.004G133600 [exp] 228 / 8e-68 AT5G08430 405 / 3e-135 SWIB/MDM2 domain;Plus-3;GYF (.1) Potri.001G305900 [exp] 201 / 4e-58 AT5G63700 406 / 2e-135 zinc ion binding;DNA binding (.1) Potri.004G161700 [exp] 110 / 4e-25 AT2G16485 1050 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.009G123800 [exp] 105 / 1e-23 AT2G16485 1064 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.007G016000 [exp] 100 / 4e-22 AT2G16485 709 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.005G117300 [exp] 90 / 1e-18 AT2G16485 695 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.004G145200 [exp] 43 / 0.0005 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.009G106700 [exp] 43 / 0.0005 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.009G092200 [exp] 40 / 0.0008 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03126 [flax] [poplar] Plus-3 Plus-3 domain PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Lus10020897 pacid=23177905 polypeptide=Lus10020897 locus=Lus10020897.g ID=Lus10020897.BGIv1.0 annot-version=v1.0 ATGAGAAAGCTGGTCTTCAATGGATGGGGCTCGGAGCAACTGCTCGAGTTCCTCGGTTCCATAGGGAAGGACACATCCATACAATTGTCTCAACAACAAG TTTTCGACATAATCACCGCCTACTGTGTCGATCACAGCCTGTTCGATCCGGAGAAGAAGAAGAAAATCCTCTGCGACGCGAAGCTTCAAACGCTTTTCAG GCGGAAGTCGATCAATAAGAATGTTTTGAATTCACACCTGGCGAAGCATTTTTCTGATAACCAATCAGATGACGATGATGATGATGAATCAGGCCTACGA GCGGAGTTCCATCAATGGATTGAAGGAATTGATGCATCAGTACCACCGCCGTGTAAGAGGATGAAAGATTCTAGATCAGATTCAGAAGCTGATTGGCACA ATACGGCAGTGGCTGTTGTACGGAAACCCAGGTTTGCATCAGTTACTGCGGAGAATCTCAAACGTGTCTACTTAAGGAGGAATGTGTTGGGCGAGTTGCT GAAGGAGCCAGAGAGCTTTGATGCTAAAGTTATAGGAGGCTTTGTGAGAGTCAAGGCTGATCCTTATGACTACGGTCGAAGAAGAAACTCCCATGTGCTT GCTCTAGTGACTGGAGTAAAGAGATCTCCAGAGAGTGCTGAACTAAGAGATTCTCTTCTTCTGCAAGTTTCTTGTGTGCTAGAAGATGTGCCTATCTGCA AGGTTTCTGATGATAAGTTCACTGAGGAGGAATGTGAGGATCTGAGACAACAAGTGAAAGATAGCCTCATTCAAAGACCTGTTTTTGTGAACTTTCAGGA GAAGGCCAGGAGTCTCCATGAGGTTATAACAAAAGATTCGCTATCTCTCTTCTTTTTGTTTCGATTCTTTTGTGGTGAAGAGTATTTGAGTTATGAGACG ATTCCCGTGTATACGCTCTGTGAGTACTTGGAAAGACTGACCAAACTTAAAACGCCAGAAGAGCAATCTAGGCTGATACATGAAATTCCAGAGATCATTG GAGATGACGACAAGGTCAAATCAGAGTGCACGCAAACGTCGAACGCTGATGAACTAGAAGCGAGCCAACAACCAGAGATGGCATCGATAGAGAAGAAAGT TGCAGGAAATGGAGCTCAAGTTACCGAGACCAGTTCCGCTGTCCCTGTGCCTAATGCATCCAGCTATCGGGACAATATGGAGAGAAGCACACAAGCCGAG AACCAAAAGGAGGAAGCAGGTACATCCAAGGTAGAGTACATTGATTTAGACGATGAGATCGATGAAGATAGTGGTGCCGAACGATCACCCTATCAAGCAG TGGACTTGAATTCGAAGATATGGCGGTGCGCGAGTACAAATGGTGTGGTGCTTGGAGGACTCTACTCGATTTCTCTGCTTAAGCAATGGAAAGATACCAG CTCCGGACCTTGCGTATTGCAGTTCAAGGTTTGGAAAGAAGGCCAAAGCAAGGAAGAGGCAATCCTTTTGGACGACGCGATTCGTCAGGTTTGTGGTTTG AAGTGA
AA sequence Show only first row Show all	>Lus10020897 pacid=23177905 polypeptide=Lus10020897 locus=Lus10020897.g ID=Lus10020897.BGIv1.0 annot-version=v1.0 MRKLVFNGWGSEQLLEFLGSIGKDTSIQLSQQQVFDIITAYCVDHSLFDPEKKKKILCDAKLQTLFRRKSINKNVLNSHLAKHFSDNQSDDDDDDESGLR AEFHQWIEGIDASVPPPCKRMKDSRSDSEADWHNTAVAVVRKPRFASVTAENLKRVYLRRNVLGELLKEPESFDAKVIGGFVRVKADPYDYGRRRNSHVL ALVTGVKRSPESAELRDSLLLQVSCVLEDVPICKVSDDKFTEEECEDLRQQVKDSLIQRPVFVNFQEKARSLHEVITKDSLSLFFLFRFFCGEEYLSYET IPVYTLCEYLERLTKLKTPEEQSRLIHEIPEIIGDDDKVKSECTQTSNADELEASQQPEMASIEKKVAGNGAQVTETSSAVPVPNASSYRDNMERSTQAE NQKEEAGTSKVEYIDLDDEIDEDSGAERSPYQAVDLNSKIWRCASTNGVVLGGLYSISLLKQWKDTSSGPCVLQFKVWKEGQSKEEAILLDDAIRQVCGL K

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08430			SWIB/MDM2 domain;Plus-3;GYF (....		Lus10020897 [exp]	0	1
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	2.4	0.9255
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10012891 [exp]	3.2	0.9037
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10013457 [exp]	3.5	0.9184
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	7.5	0.9179
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	7.7	0.9030
AT2G32760			unknown protein		Lus10016662 [exp]	9.4	0.9160
AT1G80910			Protein of unknown function (D...		Lus10034582 [exp]	9.4	0.9033
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	12.6	0.9133
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	13.0	0.9113
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	13.7	0.9065

Compare expression of checked genes

Lus10020897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.