Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63870 586 / 0 PP7, ATPP7 serine/threonine phosphatase 7 (.1.2.3) AT1G48120 429 / 6e-138 hydrolases;protein serine/threonine phosphatases (.1) AT5G10900 300 / 3e-95 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42810 179 / 9e-51 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT2G42500 135 / 5e-36 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT5G43380 134 / 1e-35 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT3G58500 132 / 1e-34 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT2G29400 130 / 5e-34 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT3G05580 128 / 2e-33 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT4G03080 133 / 5e-33 BSL1 BRI1 suppressor 1 (BSU1)-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033478 [exp] 769 / 0 AT5G63870 601 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Lus10031381 [exp] 188 / 1e-54 AT2G42810 699 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Lus10039185 [exp] 133 / 5e-35 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 132 / 8e-35 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10025174 [exp] 131 / 2e-34 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10033122 [exp] 129 / 2e-33 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10016053 [exp] 125 / 3e-32 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10016489 [exp] 125 / 3e-32 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10011827 [exp] 125 / 6e-32 AT2G39840 513 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G456600 [exp] 633 / 0 AT5G63870 605 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Potri.011G145300 [exp] 623 / 0 AT5G63870 580 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Potri.001G196600 [exp] 360 / 2e-116 AT5G10900 372 / 2e-119 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.014G141800 [exp] 184 / 5e-52 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.001G007800 [exp] 135 / 5e-36 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.003G217900 [exp] 135 / 5e-36 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.006G196100 [exp] 134 / 2e-35 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1) Potri.016G062000 [exp] 133 / 3e-35 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.019G018000 [exp] 132 / 8e-35 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.002G213300 [exp] 135 / 8e-34 AT4G03080 1439 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10020898 pacid=23177979 polypeptide=Lus10020898 locus=Lus10020898.g ID=Lus10020898.BGIv1.0 annot-version=v1.0 ATGTCGTCGCCAATTTCCCCTCTTCCGGCCGGTCCAGATCCGCAACCTCACACCATTCACGCCGACAATGCCGCCGTCGCCGAAGCTACGGCCGATTCAC CTTCTGAAGACCTCATCTGCTCCACCACGACTACCTTTTCCTCATCATTATCACCTCCATCAGATCAACAACTTCCTTCCCCAGCTCCCCCAGACATCCC TATCTCCTGGCCTCCCGACGGCCAGCTCTCATCGGAGTGGATCACCCTTCTGATTTCCGCCTTTGATTGGTCTTCGCGGAACATTTCTCCTTCTCGATTC GATTCTGTACTTCCCGTTCCTGTATTCGACGCCCTGGTACTAGCTGCGTCGAAGCTTCTCCATAAGGAGCCGAATTGCGTCCCGATCGGGGATTTGAATT CCGAAACTACTGTCGTCGTGGTCGGCGATGTCCATGGCCAGCTCCACGACGTGCTTCTCCTGTTCAGAGAAGCTGGTTTTCCTAGTGAGAATCGTTACTT TGTGTTCAATGGAGACTACGTTGATCGAGGAGCTTGGGGGCTCGAGACTTTCTTAATCTTACTGGCTTGGAAGGTGTTTATGCCGCACAGGGTGTTTCTC TTACGCGGGAACCATGAATCAAAGTACTGTACATCAGTATATGGATTTGAGAAGGAAGTGTTGGCTAAGTATGGGGATAAAGGGAAGCATGCTTATAGGA AGTGTTTGGGATGCTTTGAAGGGCTTCCCTTGGCTTCCATTATAGCAGGGTGTGTTTACACTGCTCACGGTGGACTTTTTCGAAGCAACCCTGTGATCAC CTCTCCACCAAAACCAAAGAGATCGAAACGAAAGAAGAACCAAAAAGTACATGTAAACCGCGAGACTGCCAGTAGCTTAGCTCTTGGTTCTTTCGAGGAA TTGTCTAAAGCTCGAAGGTCAGTTCTTGACCCCCCATGGGAAGGACAGAACCTAATCCCTGGTGATGTTCTATGGTCAGATCCGACAATGAAACCTGGGC TCTCGCCGAATAAAGAGCGAGGCATCGGCTTGCTTTGGGGACCCGATTGTACTGAAAGCTTTCTGAAGAGATTTCAGTTAAAGCTAATCATCAGGTCACA TGAAGGTCCTGATGCTAGAGAAAAGAGGCCTGGTCTTGGCCAAATGGACAAGGGATATACCATTGATCATGTTACAGAGTCTGGGAAACTTATTACTGTG TTTAGTGCTCCAGATTACCCACAATTTCAGGCAACAGATGAGAGACACAATAACAAAGGCGCCTATATCGTGCTGAAATCGCCGAATTTCGATGATCCAG AGTTCCATAGTTTCGAAGCAGTAACTCCAAGACCTCAGGTGAATGCTTATTATGACTTTGTAGAATCCATCGACTCTGATGAAGATCTAGACTTGGCGTC AATGGCAAATAATGATTAG
AA sequence Show only first row Show all	>Lus10020898 pacid=23177979 polypeptide=Lus10020898 locus=Lus10020898.g ID=Lus10020898.BGIv1.0 annot-version=v1.0 MSSPISPLPAGPDPQPHTIHADNAAVAEATADSPSEDLICSTTTTFSSSLSPPSDQQLPSPAPPDIPISWPPDGQLSSEWITLLISAFDWSSRNISPSRF DSVLPVPVFDALVLAASKLLHKEPNCVPIGDLNSETTVVVVGDVHGQLHDVLLLFREAGFPSENRYFVFNGDYVDRGAWGLETFLILLAWKVFMPHRVFL LRGNHESKYCTSVYGFEKEVLAKYGDKGKHAYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSNPVITSPPKPKRSKRKKNQKVHVNRETASSLALGSFEE LSKARRSVLDPPWEGQNLIPGDVLWSDPTMKPGLSPNKERGIGLLWGPDCTESFLKRFQLKLIIRSHEGPDAREKRPGLGQMDKGYTIDHVTESGKLITV FSAPDYPQFQATDERHNNKGAYIVLKSPNFDDPEFHSFEAVTPRPQVNAYYDFVESIDSDEDLDLASMANND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Lus10020898 [exp]	0	1
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10012715 [exp]	2.0	0.8289
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10036874 [exp]	5.5	0.8263
AT2G32910			DCD (Development and Cell Deat...		Lus10004128 [exp]	10.1	0.8002
AT5G25510			Protein phosphatase 2A regulat...		Lus10033069 [exp]	11.0	0.7942
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	11.5	0.8215
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10008407 [exp]	11.8	0.8007
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10041288 [exp]	13.6	0.8002
AT1G45000			AAA-type ATPase family protein...		Lus10028807 [exp]	15.4	0.7540
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10009275 [exp]	15.5	0.7750
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Lus10023050 [exp]	17.0	0.7684

Compare expression of checked genes

Lus10020898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.