Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033476 [exp] 418 / 8e-151 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G145600 [exp] 306 / 1e-106 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020900 pacid=23177947 polypeptide=Lus10020900 locus=Lus10020900.g ID=Lus10020900.BGIv1.0 annot-version=v1.0 ATGGCTGGCCTGCTGAAGAACTCACTCGCCCTCCTCTACATGTTTAGCAACATGGTGGCATCAATGTCCTCCCTTACTTCCGCCGAGGGCCACAAATTAA GCGACCATCTTTGCAGGCAGTGTCCCATTGTAGAGAAGAGCGGGTGTCCCTCAAGCTCTGCCTTCCCCCACATGACAGCTTTCGACAACAGTCTTGTTGC GGGAGCATTGCAATCCGACTTAATCGGTGCAAATGACAGAGGGATTTACTCTGTGCCGAATGTTAAAGGCGGTACCTCGAGCAAACACAATGCTTATTAT GGTTGGCAATCAACTTCTGGTTCTGCTTCTGGTTACCACAGGTTCAGCAACTACATGGACAAATGCTCTGGTGGACAGAACTATCTAACTGTCGACAAGG CTGGTAAGGTGGGACTTCGATCGTTGAAGTCACTCAAAAGCTTAGCAGAAGCTGACTGGAAATCAATCAACCCTCCGATGAAACTAAACCATAGAGAATA CAGATTTTGGATGTCTCGTAGCACAGGGAAATGCCTTACAGTTCTGGGGGCACATGGACAGAAGAAGCTTGTAGGTGTAGCTGATTGCAAATTCGATGGC TCCAATATCAAGCAGCTCTTTGCCTTCCGGTTCCACTACGATAAGGCCTACTGTGGTTGTGGTGTATACAATAACTGA
AA sequence Show only first row Show all	>Lus10020900 pacid=23177947 polypeptide=Lus10020900 locus=Lus10020900.g ID=Lus10020900.BGIv1.0 annot-version=v1.0 MAGLLKNSLALLYMFSNMVASMSSLTSAEGHKLSDHLCRQCPIVEKSGCPSSSAFPHMTAFDNSLVAGALQSDLIGANDRGIYSVPNVKGGTSSKHNAYY GWQSTSGSASGYHRFSNYMDKCSGGQNYLTVDKAGKVGLRSLKSLKSLAEADWKSINPPMKLNHREYRFWMSRSTGKCLTVLGAHGQKKLVGVADCKFDG SNIKQLFAFRFHYDKAYCGCGVYNN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020900 [exp]	0	1
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003706 [exp]	1.4	0.8864
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042903 [exp]	1.4	0.8891
AT1G69800			Cystathionine beta-synthase (C...		Lus10030788 [exp]	2.4	0.8855
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023534 [exp]	5.9	0.8392
					Lus10011017 [exp]	5.9	0.8466
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	6.6	0.8603
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10023783 [exp]	7.5	0.8343
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022312 [exp]	8.1	0.8244
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10019692 [exp]	8.8	0.8394
AT4G26120			Ankyrin repeat family protein ...		Lus10024843 [exp]	9.6	0.7829

Compare expression of checked genes

Lus10020900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.