Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31840 358 / 2e-123 MRL7-L Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1) AT4G28590 137 / 6e-38 MRL7 Mesophyll-cell RNAi Library line 7, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033475 [exp] 460 / 2e-165 AT2G31840 351 / 2e-122 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1) Lus10024925 [exp] 125 / 6e-33 AT4G28590 336 / 1e-114 Mesophyll-cell RNAi Library line 7, unknown protein Lus10022899 [exp] 123 / 3e-32 AT4G28590 322 / 3e-109 Mesophyll-cell RNAi Library line 7, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G145700 [exp] 325 / 1e-110 AT2G31840 301 / 8e-101 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1) Potri.014G195600 [exp] 125 / 3e-33 AT4G28590 355 / 4e-122 Mesophyll-cell RNAi Library line 7, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020901 pacid=23177893 polypeptide=Lus10020901 locus=Lus10020901.g ID=Lus10020901.BGIv1.0 annot-version=v1.0 ATGCATTTGGGATTGGGGCTTACCAAGCTTGCTTCTGCTAATTCTGCTTCCGCTTTTCTTCTAAGTGGCAAATTGCTGGAGGTCCATTTTCAGAAGCTGC AGGGAGGTCGTTGCAGTGTTAACAGATTAAAGGCTTCCAAACGGGTTGAAGTTGTTAATTCTGACGATGATGATGATTATGATGATGATGGCAATTCAGC CAAAAAAAAGAGTTTGAATGACCCTTATGCTATGAATGCTGATGAAAGACGTGAATGGAGGAGACAAATTAGAGAAGTTCTTGCCAAATATCCTGATAAT GAGGAAGATCTCGACCCGGAAGAGAAGAAGGCAAAGATGCAGAAACTGCTGGCTGATTATCCCCTTGTTGTCAACGAAGAGGATCCCAAGTGGCCTGAAG ATGCTGATGGATGGGGATTCAGTTTAGGCCAATTCTTCGACAAGATTTCTATCAAGAATGTCAAGAAGGATGACGATGATGATGACGATTTAGATGATAG TCGTAAGGAAATCGTATGGCAAGATGACGAGTATATCCGTCCCATCAAGGACATCAAAACTGCAGAATGGGAAGAAATTCTTTACAAAGATATCAGTCCC TTGGTTATACTAGTACATAATCGCTATAAAAGGCCGAAAGAAAACGAAAGAATTCGCGAGGAGTTGGAAAAAGCTGTGCATATCATATGGAACTGCAGGT TGCCTTCACCAAGATGTGTTGCTGTTGATGCTGTCGTTGAAACCGACTTAGTTTCTGCTCTTAAAGTTTCTAAATTCCCTGAAATCATTTTTAGTAAAGC TGGAAGGGTCTTATACCGTGAGAGAGAAATTCGAACAGCAGATGAGTTCTCAAAGATAATGGCCTACTTCTACTATGGAGCAGCCAAGCCACCTTGCTTA GACAAGATTGATGATGTCCAGGAATTGATCCCGGCTGTACAAGTCAGTCACAATCAGTGA
AA sequence Show only first row Show all	>Lus10020901 pacid=23177893 polypeptide=Lus10020901 locus=Lus10020901.g ID=Lus10020901.BGIv1.0 annot-version=v1.0 MHLGLGLTKLASANSASAFLLSGKLLEVHFQKLQGGRCSVNRLKASKRVEVVNSDDDDDYDDDGNSAKKKSLNDPYAMNADERREWRRQIREVLAKYPDN EEDLDPEEKKAKMQKLLADYPLVVNEEDPKWPEDADGWGFSLGQFFDKISIKNVKKDDDDDDDLDDSRKEIVWQDDEYIRPIKDIKTAEWEEILYKDISP LVILVHNRYKRPKENERIREELEKAVHIIWNCRLPSPRCVAVDAVVETDLVSALKVSKFPEIIFSKAGRVLYREREIRTADEFSKIMAYFYYGAAKPPCL DKIDDVQELIPAVQVSHNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Lus10020901 [exp]	0	1
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10015165 [exp]	2.6	0.9195
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003674 [exp]	6.0	0.9073
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10001217 [exp]	9.8	0.9185
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039687 [exp]	10.5	0.8915
AT5G27560			Domain of unknown function (DU...		Lus10004486 [exp]	10.8	0.8944
AT5G27290			unknown protein		Lus10033822 [exp]	11.2	0.9100
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	11.2	0.9015
AT5G27290			unknown protein		Lus10018966 [exp]	11.7	0.9023
AT2G05310			unknown protein		Lus10001175 [exp]	12.6	0.9052
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10024735 [exp]	16.2	0.8664

Compare expression of checked genes

Lus10020901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.