Plant FIBer expression Database

Lus10020902 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31870 625 / 0 PARG1, TEJ Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
AT2G31865 509 / 7e-177 PARG2 poly(ADP-ribose) glycohydrolase 2 (.1), poly(ADP-ribose) glycohydrolase 2 (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033474
[exp]
1062 / 0 AT2G31870 653 / 0.0 Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G145800
[exp]
689 / 0 AT2G31870 588 / 0.0 Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
Potri.017G002000
[exp]
676 / 0 AT2G31870 615 / 0.0 Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0223 MACRO PF05028 PARG_cat Poly (ADP-ribose) glycohydrolase (PARG)
Representative CDS sequence
>Lus10020902 pacid=23177943 polypeptide=Lus10020902 locus=Lus10020902.g ID=Lus10020902.BGIv1.0 annot-version=v1.0
ATGGAACATCGGCAAGACTTGAATTCGATTTTACCCTTCTTGCCGGTGGTTCTGCGATCTTCCAGTCTGTTCTGGCCTTCACAAACAGTGGAAGCGATCA
AATCGCTCACACAAGGACCCAACGTCAGCGATGTCACCTCTGGAGAATTGCTTTTCAATTTCATTTCTGAGATAAGAAGTACTCTTAATCTTTCTTCACA
TACTCTTGCACCCTACGCTGCAGAAGGTTATGCCCTCTTCTTCGACGAGCTGATCTCCCGTGTTGAGGCAGCAAAATGGTTTGAAGAAGGTCTTCCATCT
TTGGCAAATTTGCTTCTGGAGCTGCCTTCACTCTTAGAGTCGCACTACCAAAATGCAGATGACCTAATATCGGGGGATCTTCGTGGTGTTAAAACTGGTC
TCAGATTGTTGGGTACTCAAGAAGATGGTGTGGTATTCCTTAGTCAGGAATTGATTGGTGCTCTCTTGGCATGTGCTCTCTTTTGTATGTTTCCAGTTGA
TGATAGAGATGCAAATGATCTCCCAGTGATCAATTTTGATTACTTATTTGCGGGTCTATATAGCAGCTACAGGGAACACCAAGAAAACAAAATAAAATGT
ATCATGCACTATTTTGAAAGGATTTGCTCACTCAGACCTGTCGGCTTTATGTCTTTTGAACGGAAAGTGATCTGTCCGGAACAAGTTACAAAGGCTGGTT
TCTGGGGCCAATCTGTTACTCGCCTCTGCCCTTTTGAGGTGAGGCGAACAGGTCTCATAGAAGATCAATCTGATGGAGCTCTTGAAGTGGATTTTGCAAA
CAAGTATCTTGGAGGCGGTGCTCTTCACAGGGGATGTGTGCAGGAAGAGATCCGCTTCATGATCAATCCTGAATTAATTGCTGGCATGCTTTTCTTGCCG
TGCATGGAAGACAATGAGGCCATTGAAATCATCGGTGCTGAAAGATTCTCAAATTATACCGGGTATGCTTCTTCATTTCGTTTCAGTGGAGACCATATGG
ACCAAAAAGGTTTTGATGGCTGCAGGAGACGGAAAACTAGGATAGTTGCCATAGATGCATTATGCGACCCAAGGACAAGACAGTACAAAGTTGATTACCT
CCTTCGGGAAACTAACAAGGCATTCTGTGGTTTTTCTGTTGGATTGAAATGTGTGAATAATCAGTGTGAAGGGAATGACAGAGTCTCCAACGTTATCTCT
ACGAATGTACTCCAGTCAGATGAACTTCCCTCCACTTCGTTGGACGTCGAAATGAATGATGCAGACTATGGGAACGAAAAGGTTAAAAATTTCGACGGGA
AAGGAAACTGCCATTTAGCCAATGAAGAGACAGTTGGGATAGCAACGGGCAATTGGGGCTGTGGAGCATTCGGTGGAGATCCACAACTAAAAGCTATGAT
TCAGTGGCTTGCAGCTTCTCAGGCCTTGAGACCATCCATTTTCTACTATACATTCGGCATTGAAGCATTGCAGAATTTGGACAAGGTGGTAGAGTGGATT
GTATCACATGAATGGGTGGTAGGAGAACTATGGGATATGATGGTGGAATACTCGTCTCAAAGGTATAATGGAAGAACCAAGCTCGGGTTTCTTTCATGGT
TGCTTCCGTCTTTGACAGCGATGCAGAAAGCTGACGAAGAAGACCGAACCTCAGATGTCCAGGACATGCGTAGCTAG
AA sequence
>Lus10020902 pacid=23177943 polypeptide=Lus10020902 locus=Lus10020902.g ID=Lus10020902.BGIv1.0 annot-version=v1.0
MEHRQDLNSILPFLPVVLRSSSLFWPSQTVEAIKSLTQGPNVSDVTSGELLFNFISEIRSTLNLSSHTLAPYAAEGYALFFDELISRVEAAKWFEEGLPS
LANLLLELPSLLESHYQNADDLISGDLRGVKTGLRLLGTQEDGVVFLSQELIGALLACALFCMFPVDDRDANDLPVINFDYLFAGLYSSYREHQENKIKC
IMHYFERICSLRPVGFMSFERKVICPEQVTKAGFWGQSVTRLCPFEVRRTGLIEDQSDGALEVDFANKYLGGGALHRGCVQEEIRFMINPELIAGMLFLP
CMEDNEAIEIIGAERFSNYTGYASSFRFSGDHMDQKGFDGCRRRKTRIVAIDALCDPRTRQYKVDYLLRETNKAFCGFSVGLKCVNNQCEGNDRVSNVIS
TNVLQSDELPSTSLDVEMNDADYGNEKVKNFDGKGNCHLANEETVGIATGNWGCGAFGGDPQLKAMIQWLAASQALRPSIFYYTFGIEALQNLDKVVEWI
VSHEWVVGELWDMMVEYSSQRYNGRTKLGFLSWLLPSLTAMQKADEEDRTSDVQDMRS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G31870 PARG1, TEJ Sanskrit for 'bright', poly\(A... Lus10020902
[exp]
0 1
AT3G49200 O-acyltransferase (WSD1-like) ... Lus10009718
[exp]
1.0 0.9502
AT1G04950 EMB2781, ATTAF6... TBP-associated factor 6, EMBRY... Lus10002443
[exp]
2.2 0.9464
AT5G46550 DNA-binding bromodomain-contai... Lus10002784
[exp]
3.2 0.9481
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Lus10040764
[exp]
6.9 0.9468
AT2G02800 Kin2, APK2B protein kinase 2B (.1.2) Lus10021489
[exp]
7.3 0.9476
AT3G22260 Cysteine proteinases superfami... Lus10003816
[exp]
7.7 0.9406
AT1G27170 transmembrane receptors;ATP bi... Lus10005171
[exp]
9.4 0.9310
AT5G52210 ATGB1, ATARLB1 GTP-binding protein 1 (.1.2) Lus10027446
[exp]
10.0 0.9317
AT4G21380 ARK3 receptor kinase 3 (.1) Lus10028782
[exp]
10.6 0.9292
AT1G76710 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 R... Lus10016600
[exp]
12.7 0.9280

Lus10020902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.