Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47570 405 / 1e-137 RING/U-box superfamily protein (.1.2) AT1G06770 42 / 0.0008 DRIP1 DREB2A-interacting protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033472 [exp] 596 / 0 AT1G47570 275 / 2e-89 RING/U-box superfamily protein (.1.2) Lus10033473 [exp] 111 / 7e-28 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G137900 [exp] 450 / 2e-155 AT1G47570 612 / 0.0 RING/U-box superfamily protein (.1.2) Potri.T011501 [exp] 49 / 2e-07 AT1G47570 0 / 1 RING/U-box superfamily protein (.1.2) Potri.010G168300 [exp] 42 / 0.0004 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.003G106600 [exp] 43 / 0.0005 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10020903 pacid=23178018 polypeptide=Lus10020903 locus=Lus10020903.g ID=Lus10020903.BGIv1.0 annot-version=v1.0 ATGTCTGATTTTCGAACTGCCGATTGTAATGCGTTTTTCCCATGTTGTGAATTTGTTCCAATGCCTGATCCAGAACCCAGCAACCGGAAGTTGCAGATCC ACATAGATGCTGATAATGCTAAGTGCAGCATATGCTTAAGCATATGGCATGATGTTGTTACAGTTGGCCCTTGCCTGCATAATTTCTGCAATGGGTGCTT CTCAGAATGGCTGAAGAGATCGCAGGAGAAACGTTCCAAAGTGTTGTGTCCTCAGTGCAGAGGAATCGCACAGTTTGTCGGGAAAAATCACTTGCTGCAA GATATAAAAGAGGAGATTGTTAAGTCTGATTCTTCACTAAAGCGGTCAGATGAAGAAATTGCTCAGCTCGACTCCTATGCCTTGATAAAAACATGCATGG TTATCGAGGCTGGAAAGAAGCGCAAGCGTAACAGACCGCGTGTGGAATCAGATTTTAGAGATGAGATGGATGAGGATTTATCTGCATATCTTGATGACCA GATTATTGATCCTCATTATGCTATCTACCTAGACACAATGGATCAAATGACTCCATGCGTACAATGTGGTGCGGAGTATAATGGTTTTCGTTGCAATGGG AGCACCGTACACATAGAATGCCATGCCTGTGGTGGAGAAATGCCTTCAAGAGCTGATTCTCGTGCACCTCAACATTGTTTAGGATGTGATAGAGCATTTT GTGGTGCTTACTGGCAGTCTCAGGGATTTAATGGAAATGGCTTCCGTGTTCCATGCGGACCAGATGTTTTGAAACCTATCTCTGCTCGTTCCATCTCTGG GATTCCACACACCGCACATGGGACAAATCAAGTTGAAAAAGATATCACGGAGAGTTGTATTAGACAGCTGGGAAGAACAATACCTGATGTTATCTCAGAG TGGATAGGAAAGTTGAACAACAGGGAAATTGGTATACCGCTCGCTATGTCTTTATTCAATCGGTCAACGCTGCAACTTAATCACGCAGACAGTATCACCT CTAGCACATACACGTGCAACGAATGTTACAACAAGCTAGTTTCGTTCCTCTTGTACTGGTTCCGCATTACCACTCCTAAACATCACCTACCGCCGGATGT AGCTAACCGAAGTGACTGCTGGTACGGGTACGAGTGTAGGACTCAGCACCATAACGCAGAACATGCTCGTATGAGGAATCATGTGTGTCGCCCCACAAGT TCTTGTACTGTCGCTACTGTGGGAAACCTCGACATCGCTGTTACCCACGTTATTGTTGTCTCCGATGAACATGGTAAACTCTTGTGGCGGGCTACATTGT GTCGTTCTTATTGGTGTCACAGTGCTGGTGGTTGTTTTGGAGACAGGACTGTGGGTGAGAGGCTGGATGCTGCGGCTATAGAGCTTTCTCTTGAGGCAAG AAATGAGTTGGATAAGGAGAGACCAACAACACGGGGGAGAGACCTCCAGCAGCCTTGGCCATGGAGGTTGATGTAG
AA sequence Show only first row Show all	>Lus10020903 pacid=23178018 polypeptide=Lus10020903 locus=Lus10020903.g ID=Lus10020903.BGIv1.0 annot-version=v1.0 MSDFRTADCNAFFPCCEFVPMPDPEPSNRKLQIHIDADNAKCSICLSIWHDVVTVGPCLHNFCNGCFSEWLKRSQEKRSKVLCPQCRGIAQFVGKNHLLQ DIKEEIVKSDSSLKRSDEEIAQLDSYALIKTCMVIEAGKKRKRNRPRVESDFRDEMDEDLSAYLDDQIIDPHYAIYLDTMDQMTPCVQCGAEYNGFRCNG STVHIECHACGGEMPSRADSRAPQHCLGCDRAFCGAYWQSQGFNGNGFRVPCGPDVLKPISARSISGIPHTAHGTNQVEKDITESCIRQLGRTIPDVISE WIGKLNNREIGIPLAMSLFNRSTLQLNHADSITSSTYTCNECYNKLVSFLLYWFRITTPKHHLPPDVANRSDCWYGYECRTQHHNAEHARMRNHVCRPTS SCTVATVGNLDIAVTHVIVVSDEHGKLLWRATLCRSYWCHSAGGCFGDRTVGERLDAAAIELSLEARNELDKERPTTRGRDLQQPWPWRLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47570			RING/U-box superfamily protein...		Lus10020903 [exp]	0	1
AT3G54190			Transducin/WD40 repeat-like su...		Lus10003237 [exp]	5.0	0.8108
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	6.9	0.7902
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10030971 [exp]	7.3	0.7925
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10033388 [exp]	13.1	0.7508
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030908 [exp]	15.1	0.7739
AT5G58610			PHD finger transcription facto...		Lus10003352 [exp]	16.2	0.7597
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10017507 [exp]	16.2	0.7725
AT5G40270			HD domain-containing metal-dep...		Lus10022228 [exp]	16.7	0.7719
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Lus10007893 [exp]	17.3	0.7444
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	20.2	0.7792

Compare expression of checked genes

Lus10020903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.