Plant FIBer expression Database

Lus10020904 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14160 46 / 5e-06 2-oxoglutarate-dependent dioxygenase family protein (.1)
AT3G14140 45 / 1e-05 2-oxoglutarate-dependent dioxygenase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033471
[exp]
125 / 3e-34 AT3G14160 305 / 2e-100 2-oxoglutarate-dependent dioxygenase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G070100
[exp]
54 / 1e-08 AT3G14160 348 / 2e-115 2-oxoglutarate-dependent dioxygenase family protein (.1)
PFAM info
Representative CDS sequence
>Lus10020904 pacid=23177993 polypeptide=Lus10020904 locus=Lus10020904.g ID=Lus10020904.BGIv1.0 annot-version=v1.0
ATGGATCACCGTTCCACTCCGGCCAGCAGCGGTGGCGGGAGAAGAAGAGGTGGTCGAAGCCCTTACCAAACCGGAAGGGGATCGTGGGCTACTGCTTCTC
CTTCACCTTCTCCTTCTCCTTCTCATTATCACCAGGTTGGAGGGGAAGGTAACTATGTTGATGAATCCAGTAGGAGAATAGGTGGATTATCCCTTGGTAG
AGGAAGAGGAGGAAGTTCTCCCCAGATATCTCCTGCTTCTTTCCTTGGGAAGCCTGATCAGCCCAAGCCTGCAGGTGGTGTTAAACTGAACCCTCCTTTG
CATACAATTAACAAAGAAAAGCGTAATAGTCAGCGCAATATGGAAGGGCTTAATGGACAAGTATTTAGGCCAGGGATGGTACTTCTCAAACATTACCTCT
CATTGGATACTCAGGTATTTAAGGCAAAGTGGCAAACACATATTGCATTATTGAGTTTACTAATGAGCCATATACTCAAGCTAGTATCCAAGTTGGGTCT
GGAGCTCGAACTAGCTAGCGAGCCTATCGAGTCGAACATACCCTGGCTCAATTATGACTCATTGAAAATCGAGCTGAATCACGAATGA
AA sequence
>Lus10020904 pacid=23177993 polypeptide=Lus10020904 locus=Lus10020904.g ID=Lus10020904.BGIv1.0 annot-version=v1.0
MDHRSTPASSGGGRRRGGRSPYQTGRGSWATASPSPSPSPSHYHQVGGEGNYVDESSRRIGGLSLGRGRGGSSPQISPASFLGKPDQPKPAGGVKLNPPL
HTINKEKRNSQRNMEGLNGQVFRPGMVLLKHYLSLDTQVFKAKWQTHIALLSLLMSHILKLVSKLGLELELASEPIESNIPWLNYDSLKIELNHE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G14160 2-oxoglutarate-dependent dioxy... Lus10020904
[exp]
0 1
AT1G14160 Uncharacterised protein family... Lus10037160
[exp]
9.6 0.9486
AT2G23755 unknown protein Lus10019660
[exp]
10.1 0.9403
AT1G61590 Protein kinase superfamily pro... Lus10033294
[exp]
13.9 0.9424
AT5G17840 DnaJ/Hsp40 cysteine-rich domai... Lus10013632
[exp]
17.0 0.9328
AT5G27730 Protein of unknown function (D... Lus10022615
[exp]
18.7 0.9233
AT5G42655 Disease resistance-responsive ... Lus10032310
[exp]
23.5 0.9373
AT1G11260 ATSTP1, STP1 sugar transporter 1 (.1) Lus10042516
[exp]
27.6 0.9388
AT1G47710 Serine protease inhibitor (SER... Lus10005089
[exp]
33.0 0.9359
AT3G46540 ENTH/VHS family protein (.1) Lus10040297
[exp]
34.2 0.9314
AT3G16990 Haem oxygenase-like, multi-hel... Lus10037751
[exp]
35.6 0.9353

Lus10020904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.