Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28860 863 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G02520 823 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT1G02530 813 / 0 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01830 806 / 0 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT4G25960 805 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT2G36910 805 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G27940 798 / 0 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G10680 798 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G28010 794 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT2G47000 790 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033470 [exp] 2449 / 0 AT3G28860 986 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10008139 [exp] 1946 / 0 AT3G28860 1002 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10013178 [exp] 1703 / 0 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10030674 [exp] 831 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 824 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10023929 [exp] 818 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10017271 [exp] 797 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10010067 [exp] 791 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10017270 [exp] 786 / 0 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G165000 [exp] 1671 / 0 AT3G28860 857 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.017G081100 [exp] 855 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.006G123900 [exp] 829 / 0 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.016G093600 [exp] 824 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.002G187500 [exp] 809 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 808 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.014G113500 [exp] 800 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.003G094400 [exp] 798 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.002G019600 [exp] 792 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.001G354900 [exp] 792 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10020905 pacid=23177888 polypeptide=Lus10020905 locus=Lus10020905.g ID=Lus10020905.BGIv1.0 annot-version=v1.0 ATGGCTGACAGCTCCTTCGACGCCCGCCACCGCTCCCCTAACAACCGACGCCGTCGCCGTGGCAGCGGCCTTCCCCCATCTCCGGCCTCTCGTTCCTACG CACTTTTCAGCTCCATAGACATGTCACTCGTCTCCGGAAACTTAACTCCCCATCGTCGTCGTCGCGACCCTAGCCGGAATCCTCCGTCGGCCGCATTCGC CGCCGATGGTGACGTGTCATGGAAGGGTGAGGTGTCCTGGCAGTACGAGCCCACTGGGTGGATGAATGACAGCCGTACTTTCGGCGCGATTATGAGCCCA TGGGCTGCTACGACTCCTTCAGCCCACCGGGCCATGCGGAGATCAGCCCAAGAATTTTACCTTTCCCGAACCCGTGGCGGGTTCAGAGGTTCGGGAACTT CTTACTACGATCGCTCCGGAATTAGCGGCGTTTCCACCGGAAGGCTTAATCTGAAAAGCTACCGAGATGACGGCGACGACAATGGTAATAACGGTCACGT CGTTAATGTTAGAGATTACGACGCTGCTCCGGCGTCGGCGAAGGCTGAGAAAGCTCCGTCACAGTGGAGCGAGCTGGGAGCTGTCGCTGAACATCAGAGC AGGGGAAGTAATGTTGGAATCAATGGCGGTGGAGGACGTCAAGATAGGAATGACTCGAAGCGGAACTCCGTTTCGAATGCTTACGTTGACGTAGCAGTTA GTCCGGAGATCGGTCGTGGAAGTTATGGAGATTTTTATAAGAGCGGCGGTCGAGGTGGGGAATATGAGGGTGGTGATTATGAGGAATATGATGACGAGGA GGAGGAGGAAGAGGAAGAAGGAAGGAAATCGGTTGGATTGTTTGGACTGTTCAAGTACTCTACTGGATGGGACATGTTCCTTGTGTTCTTGGGATGTCTA GGAGCTCTCATCAATGGCGGGGCTCTTCCTTGGTACTCTTTTCTATTTGGCAACTTTGTGAACAAGATTGCTAAGGATACCAAGGATGAGATTATGGACG ATGTTCAGAAAATTTGTGTGCAGATGTCTGCACTTTCGATAGTGGTGATGTTTGGAGCATACATAGAAATCACCTGTTGGAGATTGGTGGGAGACCGGTC AGCTCATCGGATAAGAACCAAGTATTTGAGAGCAATCCTAAGGCAAAACATTGGCTTTTTTGACACTCAAATCAGCACAGGGGACATAATGCATGGAATT GCAAGTGATGTTGCGCAAATTCAAGAAGTGATGGGAGAAAAGATGGCTCATTTCGTTCAACAACTATTTACCTTCTTTTGTGGTTACATGGTTGGTTTCT TGAGATCATGGAAGGTATCTCTTGTGGTCTTCTCAGTGACCCCTTTGATGATGTTTTGTGGCATTGCTTATAAAGCTATCTATGTTGGTCTGGCTGCTAA AGAAGAGGCATCATATATGAAAGCTGGCACTGTTGCTCAACAAGCCATCAGTGCAATAAGAACTGTGCTTTCTTTTGTTGCAGAAAATAAATTAGCTGAC AAATACTCGCAGCTGTTGACTAACTCGGTTCCGATTGGAGCAAAGATTGGATTTGCGAAGGGGGCAGGAATGGGCGTCATTTACTTGGTCACGTACTCCA CATGGGCATTAGCCTTCTGGTATGGGTCGATCTTGGTTGCAAAAGGGGAGATCACCGGAGGGGATGCAATCGCGTGTTTCTTTGGTGTTAACTTAGGAGG AAGAGGGCTGGCACTATCCTTGTCATATTTTGCTCAGTTTGCTCAAGGCACAGTTGCAGCGACACGTATGTATGAAATCATAGACAGGGTTCCAGTAATT GATCCTTATAGTCTTGAAGGGAGGACAATGTCAGGAACCCGTGGAAGGATCGAGCTGAAAGGAGTCACTTTCGCGTATCCATCTCGTCCAGAGACACCAA TCTTAACATCCATCAACCTAGTTATTCCATCTTCAAAGACACTTGCGCTGGTGGGTGCAAGCGGAGGAGGCAAATCCACCATTTTTGCTCTTATAGAAAG ATTCTATGACCCAAATTCTGGAGTGGTTACCTTGGATGGTCATGACTTGAGGACGCTACAGGTTAAGTGGCTAAGAAGCCAAATGGGAATGGTAGGGCAG GAGCCAATCCTCTTTGCAACAAGCATTATGGAGAATGTTCTTATGGGAAAGGAGGATGCCACCAAGAGAGAGGCAATTAAAGCCTGTATTGCTGCCAATG CTCATGAATTCATATCTGCTCTTCCAGAAGGCTATGATACTCAGGCTGGTGACAGAGGAACACAGCTCTCAGGCGGTCAGAAACAGAGAATTGCATTGGC TCGTGCCATCCTTAAGGACCCCACTATCCTTCTTTTAGATGAACCCACAAGTGCATTAGATCCCGAATCCGAGTCTGCAGTTCAGAAAACCATTGACAAA ATCTCTGTTGGTCGAACAACGGTTGTCATTGCTCATAGATTAGCAACGGTGAAAAATTCCAACACCATTGTTGTTCTTGATCAAGGTTCTGTGGTTGAAA TCGGAAATCATCGCCAGCTAATGGACAAAGCTGGTTACTACTATGACCTTGTCAAGCTTGCTTCTGACGGGGTCTCAAAACCAATGTCGAATCAAGCGGA ATTCAACAAGGATCGTGGGAAGTCTATGGATGAGAAGTCAGTCAGTGATATCAAATCAACTACCAAGTTTGAGAAATCTAGGTCAATGCACTCCAAATCA AAGCTATTAGAGAGAGACGCTCCGGATGAAACACAGAAAACTCGTGAGATGACCAAATTTCGGCTCTCAGATGTGTGGGATCTTCAAAGACCAGAATTCC TGGCACTTGCTTTAGGCTTCCTTGGGGGTATTGTTGCAGGTGCAATTCTATCTGTATTTCCTTTCCTTCTTGGCTTAGCCCTTCAGGTCTATTTTGATGA TGACCCTTCAAAGCTAAAAAGAGATGTTGGTAATCTCGTTTTAGTTATTTTGAGTCTTGGGGTTGGCTTGATTGTCACAATGACTGGCCAGCAAGGCTTT TGTGGGTTGGCAGGTACAAAACTGACAGTAAGAGTGAGAAAGCTCTTGTTCCATTCTATTCTTAGACAGGAACCTGGTTGGTTTGATTTAGAAGAAAACT CTGGCGCATCTCTTATCTCAAAGTTGTCGGTTGATTGCATCACTCTTAGATCAGCTCTTGGGGACAGATTCTCAGTATTGTTAACCGGTTTAAGTTCAGC TGCTGTTGGTCTTGGTTTGTCATTTTTCCTTCAATGGAAACTCACCCTTGTAGCTGCAGCACTAACTCCTTTCACCCTTGGTGCAAGTTACTTGAATTTG ATCATCAACGTCGGGCCGAAGCTGGACAATGACTCTTACACCAGAGCAAGCAACATTGCTTCTAGTGCTGTGTCAAACATCAGAACAGTAACAACGTTTG CAGCTCAGGAACAAATAGTCCGGTCCTTTGGTCAAGCTCTTGCAGAACCAACGAAAAAATCAGAGAGGAAATCTCAGATCTTAGGGCTAACACTTGGTTT CTCCCAGGGTGCCATGTATTTCGCTTACACTTTGACCCTCTGGTACGGAGCCTACCTTGTCAAGCAAGGAGAATCGAACTTTGGTGATGTGTATAAAATC TTCCTCATCCTTGTTTTAAGCTCATTTTCTGTTGGACAACTAGCTGGACTAGCACCAGACACTTCAATGGCCGCAACATCTATCCCTGCTATCTTCAACA TCATTCATCGCAGGCCTTTGATCATCAGCGCAGCAAAGGCAAAGAAAGTTGATAGATCAAAGCCATTGGATATTGAACTCAGGATGGTGACATTTTCATA TCCTTCCAGGCCTGAGGTTACAGTGTTGAGAGACTTCTCCTTAAAGATCAAGGGTGGCAGCATGGTAGCGTTGGTAGGGGGTAGTGGTTCGGGAAAATCA ACCGTTGTATGGTTGGTGCAAAGGTTTTACGACCCTAATCAAGGAAAGGTGAAACTCGGAGGTGTAGACCTGAGGGAGCTTGATCTCAAGTGGCTAAGGA TGCAAATAGCTTTAGTTGGTCAGGAGCCTGCACTGTTTTCAGGTACCATAAGAGACAATATTGCGTTTGGTGATACTAATGCTTCATGGGCTGAGATTGA AGAAGCTGCTAAAGATGCTTACATCCATAAGTTCATCAGCAGCCTCCCTCAAGGCTATGACAGTGAGGTAGGTGAAAGTGGCTTCCAATTATCAGGAGGA CAAAAACAAAGACTAGCAATAGCAAGGGCAATGCTAAAGAAATCGAGTGTGCTGCTGCTTGATGAAGCTAGCAGTGCATTGGACTTGGAGTCGGAGCAGC ATGTCCAGGCAGCACTCCGGAAGGCGTCTAAGAGAGCCACCACTGTTGTCGTCGCACATAGGCTCTCTACGATTAGAGAAGCTGACGTGATTGCTGTGGT GAAAGATGGTTCAGTGATAGAGTCCGGGAGTCATAACTCACTCCTGAATTCTAACCTTAATGGTATCTATGCTAGCATGGTCCGCTCCGAGGCAGAAGCT ACTGCATTTGCTTGA
AA sequence Show only first row Show all	>Lus10020905 pacid=23177888 polypeptide=Lus10020905 locus=Lus10020905.g ID=Lus10020905.BGIv1.0 annot-version=v1.0 MADSSFDARHRSPNNRRRRRGSGLPPSPASRSYALFSSIDMSLVSGNLTPHRRRRDPSRNPPSAAFAADGDVSWKGEVSWQYEPTGWMNDSRTFGAIMSP WAATTPSAHRAMRRSAQEFYLSRTRGGFRGSGTSYYDRSGISGVSTGRLNLKSYRDDGDDNGNNGHVVNVRDYDAAPASAKAEKAPSQWSELGAVAEHQS RGSNVGINGGGGRQDRNDSKRNSVSNAYVDVAVSPEIGRGSYGDFYKSGGRGGEYEGGDYEEYDDEEEEEEEEGRKSVGLFGLFKYSTGWDMFLVFLGCL GALINGGALPWYSFLFGNFVNKIAKDTKDEIMDDVQKICVQMSALSIVVMFGAYIEITCWRLVGDRSAHRIRTKYLRAILRQNIGFFDTQISTGDIMHGI ASDVAQIQEVMGEKMAHFVQQLFTFFCGYMVGFLRSWKVSLVVFSVTPLMMFCGIAYKAIYVGLAAKEEASYMKAGTVAQQAISAIRTVLSFVAENKLAD KYSQLLTNSVPIGAKIGFAKGAGMGVIYLVTYSTWALAFWYGSILVAKGEITGGDAIACFFGVNLGGRGLALSLSYFAQFAQGTVAATRMYEIIDRVPVI DPYSLEGRTMSGTRGRIELKGVTFAYPSRPETPILTSINLVIPSSKTLALVGASGGGKSTIFALIERFYDPNSGVVTLDGHDLRTLQVKWLRSQMGMVGQ EPILFATSIMENVLMGKEDATKREAIKACIAANAHEFISALPEGYDTQAGDRGTQLSGGQKQRIALARAILKDPTILLLDEPTSALDPESESAVQKTIDK ISVGRTTVVIAHRLATVKNSNTIVVLDQGSVVEIGNHRQLMDKAGYYYDLVKLASDGVSKPMSNQAEFNKDRGKSMDEKSVSDIKSTTKFEKSRSMHSKS KLLERDAPDETQKTREMTKFRLSDVWDLQRPEFLALALGFLGGIVAGAILSVFPFLLGLALQVYFDDDPSKLKRDVGNLVLVILSLGVGLIVTMTGQQGF CGLAGTKLTVRVRKLLFHSILRQEPGWFDLEENSGASLISKLSVDCITLRSALGDRFSVLLTGLSSAAVGLGLSFFLQWKLTLVAAALTPFTLGASYLNL IINVGPKLDNDSYTRASNIASSAVSNIRTVTTFAAQEQIVRSFGQALAEPTKKSERKSQILGLTLGFSQGAMYFAYTLTLWYGAYLVKQGESNFGDVYKI FLILVLSSFSVGQLAGLAPDTSMAATSIPAIFNIIHRRPLIISAAKAKKVDRSKPLDIELRMVTFSYPSRPEVTVLRDFSLKIKGGSMVALVGGSGSGKS TVVWLVQRFYDPNQGKVKLGGVDLRELDLKWLRMQIALVGQEPALFSGTIRDNIAFGDTNASWAEIEEAAKDAYIHKFISSLPQGYDSEVGESGFQLSGG QKQRLAIARAMLKKSSVLLLDEASSALDLESEQHVQAALRKASKRATTVVVAHRLSTIREADVIAVVKDGSVIESGSHNSLLNSNLNGIYASMVRSEAEA TAFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10020905 [exp]	0	1
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	3.0	0.8484
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10002285 [exp]	6.0	0.8220
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	6.3	0.8205
AT3G08020			PHD finger family protein (.1)		Lus10016404 [exp]	11.8	0.8024
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Lus10034919 [exp]	12.7	0.7928
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	13.0	0.8235
AT5G48120			ARM repeat superfamily protein...		Lus10037557 [exp]	15.0	0.7775
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10014746 [exp]	18.5	0.7478
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10025377 [exp]	19.2	0.7905
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10037846 [exp]	24.9	0.7063

Compare expression of checked genes

Lus10020905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.