Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56891 51 / 1e-07 Heavy metal transport/detoxification superfamily protein (.1) AT4G08570 50 / 2e-07 Heavy metal transport/detoxification superfamily protein (.1) AT5G37860 50 / 7e-07 Heavy metal transport/detoxification superfamily protein (.1) AT5G27690 50 / 1e-06 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 49 / 1e-06 Heavy metal transport/detoxification superfamily protein (.1) AT1G29100 48 / 1e-06 Heavy metal transport/detoxification superfamily protein (.1) AT4G35060 48 / 2e-06 HIPP25 heavy metal associated isoprenylated plant protein 25, Heavy metal transport/detoxification superfamily protein (.1) AT1G22990 45 / 1e-05 HIPP22 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) AT3G06130 46 / 2e-05 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G66110 44 / 2e-05 HIPP27 heavy metal associated isoprenylated plant protein 27, Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033469 [exp] 250 / 9e-80 AT5G27690 56 / 2e-09 Heavy metal transport/detoxification superfamily protein (.1) Lus10013911 [exp] 56 / 6e-09 AT1G06330 103 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10039419 [exp] 52 / 4e-08 AT4G08570 215 / 5e-73 Heavy metal transport/detoxification superfamily protein (.1) Lus10020704 [exp] 50 / 4e-07 AT1G06330 173 / 3e-56 Heavy metal transport/detoxification superfamily protein (.1) Lus10032924 [exp] 51 / 5e-07 AT4G27590 122 / 4e-35 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10001892 [exp] 50 / 6e-07 AT1G06330 101 / 1e-27 Heavy metal transport/detoxification superfamily protein (.1) Lus10027470 [exp] 49 / 8e-07 AT3G48970 167 / 2e-54 Heavy metal transport/detoxification superfamily protein (.1) Lus10016436 [exp] 47 / 3e-06 AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1) Lus10019676 [exp] 47 / 3e-06 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G005300 [exp] 117 / 4e-30 AT4G39700 55 / 3e-09 Heavy metal transport/detoxification superfamily protein (.1) Potri.011G065600 [exp] 62 / 1e-11 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G107500 [exp] 59 / 1e-10 AT1G06330 213 / 5e-72 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G106500 [exp] 58 / 4e-10 AT1G06330 217 / 1e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G092200 [exp] 54 / 8e-09 AT4G08570 193 / 3e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G003700 [exp] 54 / 1e-08 AT4G08570 207 / 5e-70 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G167000 [exp] 53 / 2e-08 AT4G08570 229 / 1e-78 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G056800 [exp] 53 / 2e-08 AT1G06330 147 / 4e-46 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G024800 [exp] 52 / 6e-08 AT3G56891 167 / 5e-54 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G175400 [exp] 49 / 5e-07 AT4G38580 254 / 2e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10020906 pacid=23178001 polypeptide=Lus10020906 locus=Lus10020906.g ID=Lus10020906.BGIv1.0 annot-version=v1.0 ATGGCTTCCCATCCAGAGCCAGAGAATCCTGCTAGAGTTACAGAGATACAAGTCCGGGTGGACTGCAATGGCTGCGTCCAGAAGATCAACAAGGCACTTC ATGGCATCAATGGGATTTACGATCTCTACGTCGACTTCCCTCACCAGAAGTTGACAATTGTCGTCGGGTGTGCTGATCCGGAAAGGATCGTTAAAGCCAT TAGGAAGACTAGGAAAACAGCTATCATAATCTCTTCTTCTTCTTCTTCCTACGTTGAACAAAAACAACCTGCTGACACTCCTCCTCCTCCTCCACAGCCA CCAGATCACCACGAAAACGACGACGACGTACTGTCTGCCAATGAATCATCTAATCCTCCGGCAGCTGCTGACTCGCCTCCACCACCACCTGAACCATCAC CACCACCACCACCACCACCATCACAACCATCAGTTGATCCGCAGCCACCAGCACAGGCGGAACATCAGAATCAACAACCGGAGGAAAATTTACCATCAAA CCAGCATCACCCGCTGGCAGGTGATTACCCACCTAGAAGACAGGGAGATGCAGGGGAGGTCCATTTCATTTACCATCATGATCACCAACCACCACCACCA CCGGATCACTACGGCTACAGATATGGCGCCTACGGTGGCTCTAGTTCTACTCCTGGCTATCATCAATTCGAAAGATACCGCGATGGACCAGTACCGTTGT ATCCTCAAGTTCCTCCTCCACAGATGGAACGGCAACCAGTGTACGTGACGAATCACAGCCCTCAAGTTCCTCCACAGATGGAACGGCAGCAACCAGTGTA CGTGACGCATCAAAGCCCTCAAGTTCCGATGGGACGGCAGCAACCAGTGTATGTGACGCATCAAAGCCCACGAGTTCCTCCTCCACAGATGCAGCAGCAA CCTGTTTACGTGACGACGAATCACAGCTATAACACGTACAGACCATCCCCGTATGTGACGGAGTACGAATATGTCCGAACAGCGATGCCGGCCCCACCAC CACCACCACAACAACAACAACCGAGATACACGCATAATTACAGCAGGATGGACTACTACAGCGAGGAATACCATGACGTTAACCCGCCAAGTAATGGAAA CATCACGTCCATGTTCAGTGACGAAAACCCCAACTCCTGCACAGTTATGTGA
AA sequence Show only first row Show all	>Lus10020906 pacid=23178001 polypeptide=Lus10020906 locus=Lus10020906.g ID=Lus10020906.BGIv1.0 annot-version=v1.0 MASHPEPENPARVTEIQVRVDCNGCVQKINKALHGINGIYDLYVDFPHQKLTIVVGCADPERIVKAIRKTRKTAIIISSSSSSYVEQKQPADTPPPPPQP PDHHENDDDVLSANESSNPPAAADSPPPPPEPSPPPPPPPSQPSVDPQPPAQAEHQNQQPEENLPSNQHHPLAGDYPPRRQGDAGEVHFIYHHDHQPPPP PDHYGYRYGAYGGSSSTPGYHQFERYRDGPVPLYPQVPPPQMERQPVYVTNHSPQVPPQMERQQPVYVTHQSPQVPMGRQQPVYVTHQSPRVPPPQMQQQ PVYVTTNHSYNTYRPSPYVTEYEYVRTAMPAPPPPPQQQQPRYTHNYSRMDYYSEEYHDVNPPSNGNITSMFSDENPNSCTVM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27690			Heavy metal transport/detoxifi...		Lus10020906 [exp]	0	1
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10010362 [exp]	1.4	0.9691
AT4G27290			S-locus lectin protein kinase ...		Lus10016862 [exp]	2.8	0.9524
AT5G63710			Leucine-rich repeat protein ki...		Lus10035959 [exp]	3.9	0.9512
AT3G45070			P-loop containing nucleoside t...		Lus10003070 [exp]	6.0	0.9508
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	6.5	0.9465
					Lus10032860 [exp]	7.4	0.9505
AT1G07400			HSP20-like chaperones superfam...		Lus10021109 [exp]	7.7	0.9422
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10009321 [exp]	7.7	0.9491
					Lus10010378 [exp]	8.9	0.9464
AT5G27690			Heavy metal transport/detoxifi...		Lus10033469 [exp]	9.2	0.9355

Compare expression of checked genes

Lus10020906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.