Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11240 596 / 0 transducin family protein / WD-40 repeat family protein (.1) AT1G15420 47 / 2e-05 unknown protein AT1G61210 44 / 0.0006 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033468 [exp] 1017 / 0 AT5G11240 628 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10023255 [exp] 44 / 0.0004 AT4G21130 517 / 0.0 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G005400 [exp] 732 / 0 AT5G11240 651 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.003G060900 [exp] 56 / 3e-08 AT1G15420 163 / 5e-48 unknown protein Potri.001G173300 [exp] 55 / 6e-08 AT1G15420 164 / 2e-48 unknown protein Potri.013G079600 [exp] 44 / 0.0003 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04003 [flax] [poplar] Utp12 Dip2/Utp12 Family CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10020907 pacid=23177899 polypeptide=Lus10020907 locus=Lus10020907.g ID=Lus10020907.BGIv1.0 annot-version=v1.0 ATGGCGTCTACCAATATCAGGGACCTGCTGACTGCATTCAGTCCGTCATTGGACTACTTCGCAATTAGCTCAGGCGATGGTCGAGTAAAGATTTGGGACA CTTTGAAGGGCCAGCTGCAGACGGAGTTTGCGGATATATCGTCCAGTGATGTCAGTCTGTTGTCTAAAACGAAGAGAGGACACCTTTCGGTTGATTATAC ATGCATGGAATGGCTATCTCTTGACAGAAAGAAGAAACGGAAACTAGGGAGTTCATTGTTAGTATTAGGAACTGGTAGTGGAGATGTCCTGGCGCTTGAT GTCGCTGCTGGTCAACCCAAGTGGATCGTAAGCGATTGCCATCCTGGGGGTGTGACTTCGATTTCATTTTCTGCTAGTGAATCAAGCATCTACACTGCAG GTGCTGATGGAATGATTTGCCAAATTGACCCGCAAACTGCAAATGTGACCAGAAAGTTTAAAGCTTCAACCAAAGCAATATCTTCCATGTGTGTTTCTCC AGATGGGAAGACACTGGCAACTGCTGCTTCACAAGTAAAAACATTCAGTTGCTCTGATCACCAAAAACTACAGAAATTTTCTGGGCATCCAGGAGCTGTT CGATGTATGATCTTTACTGATGATGGTAAATACATTCTCTCCTCTGCGAGTAATGAAAGATATGTCACCCTATGGAAAACTGGCGGTGGAAAGAAGCAGT CAACAAGCTGTGTTTTGGCAATGGAGCATCCTGCAGTTTTCCTTCATGCCAAGTGTGGTGAGAACGGCGGAGGAGATGAGCCAGGGCTTTATGTTTTGGC CATTTCGGAGACCGGTGTTTGTTATACATGGTGCGGACAAAGTGTTGAGGAACTACGGAGTGCTAAGTCCACAATGGTCTCATTATCTCACGATGATACC TCCCTGAAAAGTCAGAGGGGTCCACTCCCTGCAATATTTGCAGCTCAATTACAAGTCATAGCAAAACCTACATCTGTAAATGTCTATCTTGCCTATGGTT TGCTGGTGAAGCCTTCATTTCAGAAAATATTTGTGGAAGCTGGCAAAGATGTGGAGTTAAATAGTTCACAGGATGGAGTTCTCCTTCCAGTTAGCCAGTC TATCAAACCACAGAAGGCGACAAATGCACGAGGCAAGTTGTTTTTCTTATTTAAAGTTACTGCACTTGACCGTGCAAATGTGGAGGATGCACTTCTTCCA GTACCAAAAATATCTGATTTTCATGATAAAAAGAAGAGAGACAGACGGAGCAATGTATCTGATGACATCATGTATGATTTGGTTGATAACAGGAGTGAAC CCGAGTCTATGGAGTTTAAAGATGACATGGTAGATGTTGAAACTCCAACAACTAGCATGGAGACACGACTCAGACAATTAAGAATACTACCTGGTGATGC TGACATTCTCAAACCAGCATTGGACTCTCTAACTAATGTGGGAATCCAACTTCAAGATAATGTTCCCCAAAAGAAGATCAGGACTTCTGTTTTGTCCATG GAACCTAGCAATGCGCACAAGTTACTTGACACCTTGCTGTCCGTATGGCAGTCCAGGTCACATAATGCCAAATCAGTGCTACCGTGGATATCCTGGATAT TGGTCATTCATGGGCGTCACATCATGGCTCAAGAAAAACCCGAAACCCAAATGCTTAATTCACTGCTGAAGGTCGCGCGATCCAGAGGGAATGCTGTTGA GCCTTTACTGCAGTTGTCAGGTCGATTGCAGCTTGTGACCGCACAGTTTGACAAGGGCTCCTTGGATACGAACAAAACTTATGTACAAGTAGAGGATGAA GATGATGATGACGAGGAAGTGGATGAAGATGTATATAGGGAGGAAGACGATCAGTCAGATCTAAGCAGTGATGATGATAAGAATTGA
AA sequence Show only first row Show all	>Lus10020907 pacid=23177899 polypeptide=Lus10020907 locus=Lus10020907.g ID=Lus10020907.BGIv1.0 annot-version=v1.0 MASTNIRDLLTAFSPSLDYFAISSGDGRVKIWDTLKGQLQTEFADISSSDVSLLSKTKRGHLSVDYTCMEWLSLDRKKKRKLGSSLLVLGTGSGDVLALD VAAGQPKWIVSDCHPGGVTSISFSASESSIYTAGADGMICQIDPQTANVTRKFKASTKAISSMCVSPDGKTLATAASQVKTFSCSDHQKLQKFSGHPGAV RCMIFTDDGKYILSSASNERYVTLWKTGGGKKQSTSCVLAMEHPAVFLHAKCGENGGGDEPGLYVLAISETGVCYTWCGQSVEELRSAKSTMVSLSHDDT SLKSQRGPLPAIFAAQLQVIAKPTSVNVYLAYGLLVKPSFQKIFVEAGKDVELNSSQDGVLLPVSQSIKPQKATNARGKLFFLFKVTALDRANVEDALLP VPKISDFHDKKKRDRRSNVSDDIMYDLVDNRSEPESMEFKDDMVDVETPTTSMETRLRQLRILPGDADILKPALDSLTNVGIQLQDNVPQKKIRTSVLSM EPSNAHKLLDTLLSVWQSRSHNAKSVLPWISWILVIHGRHIMAQEKPETQMLNSLLKVARSRGNAVEPLLQLSGRLQLVTAQFDKGSLDTNKTYVQVEDE DDDDEEVDEDVYREEDDQSDLSSDDDKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11240			transducin family protein / WD...		Lus10020907 [exp]	0	1
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	1.7	0.9201
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10005385 [exp]	3.2	0.9303
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011504 [exp]	3.7	0.9020
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	5.1	0.9250
AT3G16810		APUM24	pumilio 24 (.1)		Lus10016836 [exp]	5.7	0.8810
AT1G13160			ARM repeat superfamily protein...		Lus10036950 [exp]	6.0	0.8947
AT1G10490			Domain of unknown function (DU...		Lus10005792 [exp]	9.6	0.9108
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021017 [exp]	10.1	0.9021
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	11.2	0.8577
AT5G17270			Protein prenylyltransferase su...		Lus10035305 [exp]	11.8	0.8858

Compare expression of checked genes

Lus10020907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.